| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,179 | A→G | 7.7% | V895V (GTA→GTG) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,179 | 0 | A | G | 7.7% | 389.0 / 16.7 | 143 | V895V (GTA→GTG) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base A (58/73); new base G (5/6); total (63/80) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.81e-01 | |||||||||||
Only 100 of 143 total aligned reads displayed.
TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAAC > NC_002947/197034‑197323 | tCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑GATc < 7:148127/149‑1 (MQ=21) cAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑GATCa > 7:180413/1‑149 (MQ=21) gacGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCAc < 4:144944/147‑1 (MQ=38) gCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCAc > 3:78494/1‑148 (MQ=38) cGTCACAATCGAGAACGCCACAGGCGGTAAAATCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATAAACGACTCCGTAGAAGCCACCACCGCGACCCTCCCGGCGACCCCGTCGG‑TCA‑CAGAACGCGGCGT‑AATCAcc > 5:195453/1‑148 (MQ=11) gTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTa < 3:144429/149‑1 (MQ=37) tCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑GATCACTTa > 1:305996/1‑148 (MQ=17) cACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGCCCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTaca > 4:21705/1‑149 (MQ=37) ccATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑GATCACTTACAcc > 5:126434/1‑149 (MQ=17) ccATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACAcc < 8:12359/149‑1 (MQ=37) ccATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACAcc > 3:58671/1‑149 (MQ=37) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑GATCACTTACACCg < 2:305996/149‑1 (MQ=17) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGt > 3:169447/1‑149 (MQ=37) tCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGt > 1:17001/1‑148 (MQ=37) cGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGa > 3:295196/1‑149 (MQ=37) gagaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCGGGCTCAGACCACTATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑GATCACTTACACCGTGa < 1:141693/148‑1 (MQ=255) gagaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGa < 4:213934/148‑1 (MQ=37) gagaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGAc < 7:228235/149‑1 (MQ=37) gagaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCGCAGCCCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGCGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACCCCGTGAc > 6:42176/1‑149 (MQ=11) agaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGAcc < 7:167589/149‑1 (MQ=37) aaCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑GATCACTTACACCGTGACCCt > 5:267958/1‑149 (MQ=17) atgCCACAGGCGGTAATTTAGAGCAACTGACCCCTAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑GATCAc < 8:210519/131‑1 (MQ=255) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGa < 5:267366/149‑1 (MQ=37) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGa < 6:240516/149‑1 (MQ=37) cacaGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGc > 1:34912/1‑148 (MQ=37) caGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAAt < 7:207074/149‑1 (MQ=35) ggCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATcc < 3:86322/149‑1 (MQ=34) gCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑t < 1:240321/149‑1 (MQ=34) gttAATTTCGACGAACAGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCGTGACGGCGAGCCCGTCGG‑TCA‑CCGATGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGc < 1:119301/147‑1 (MQ=11) ggTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCg > 1:233467/1‑130 (MQ=25) ggTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCg < 2:233467/130‑1 (MQ=25) gTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGcc < 8:2845/149‑1 (MQ=34) gTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGcc < 4:297472/149‑1 (MQ=34) gTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGcc < 3:191647/149‑1 (MQ=34) tAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGccc < 5:82516/149‑1 (MQ=34) tttCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGa > 1:203141/1‑149 (MQ=34) tttCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGa > 7:255679/1‑149 (MQ=34) tCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCTGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGAc < 7:211335/148‑1 (MQ=21) tCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGAc < 1:207779/148‑1 (MQ=34) gAGCTACTGACCGCGATTGCGACCCGGGCTCAGACCACGATCTACGAATCGGTCGATGCCACCAACGCGACCCTGACGGAGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTAGACCGTGACCCTGAGCATTCC‑TGCCCAGACGc < 6:180099/148‑1 (MQ=11) gAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGt < 2:165105/122‑1 (MQ=35) cTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGtga > 3:290982/1‑146 (MQ=11) tGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGtga > 2:135302/1‑145 (MQ=11) gACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCg > 1:69055/1‑149 (MQ=38) aCCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACGCTGAGCAATCC‑TGCCCAGACGCCGGTAAcc < 6:189365/147‑1 (MQ=38) aCCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAAcc < 6:193784/147‑1 (MQ=38) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGTCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCa < 3:257094/101‑1 (MQ=25) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGTCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCa > 4:257094/1‑101 (MQ=25) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGa < 3:253905/149‑1 (MQ=39) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGAcc > 5:98609/1‑149 (MQ=39) gAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGAccc < 2:248000/149‑1 (MQ=39) tCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGt > 2:84777/1‑149 (MQ=38) gACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGAcctggccgt > 5:221519/1‑142 (MQ=255) aCCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCaa > 7:178173/1‑149 (MQ=37) aCCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCaa < 6:156823/149‑1 (MQ=37) ccACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGtcatc < 5:238682/149‑1 (MQ=40) cACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATc < 7:118719/101‑1 (MQ=32) cACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATc > 8:118719/1‑101 (MQ=32) aCGATCAACTACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑t < 1:86861/102‑1 (MQ=17) aTCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGGGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCTTGACCCTTAGCAATCC‑TGAGCAGACGCCGGTAACCGTGACCCTGT‑CTAGGGCCAGGTCATCACTGtt < 6:153008/149‑1 (MQ=14) gACTCGGTCGATGCTACCACCGCGACCCTGACGGAGATCGCGTCGG‑TCA‑CCGAAGGATGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCATACGCCGTTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGc < 6:254140/149‑1 (MQ=14) aCTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGcc < 6:98609/149‑1 (MQ=255) tCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCgg > 2:203365/1‑149 (MQ=255) ggTCGATGCCACCACCGCGACCCTGTCGGCGAGCCCGTCGGCTAATCTGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCgg < 1:102814/149‑1 (MQ=14) ggTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATc > 4:258603/1‑86 (MQ=33) tCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTg < 4:126633/135‑1 (MQ=255) tCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTg > 3:126633/1‑135 (MQ=255) tGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAAcc > 1:177814/1‑148 (MQ=255) gCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAAccc < 8:255679/148‑1 (MQ=255) gCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAAcc > 8:206852/1‑147 (MQ=255) ccaccaCCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAg < 1:122567/149‑1 (MQ=255) ccaccaCCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAg < 7:206852/149‑1 (MQ=255) ccaccaCCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAg < 2:34912/149‑1 (MQ=255) caccacCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAgg < 7:121331/149‑1 (MQ=255) cacaacCGCGACCCTGACGGCGAGCCAGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAgg > 4:164568/1‑149 (MQ=255) accaccGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAggg > 1:37654/1‑149 (MQ=255) caccGCGACCCTGACGGCGAGCCCGTCGGATCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAggg > 1:23150/1‑148 (MQ=255) cgACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTc < 5:140667/149‑1 (MQ=255) cccTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCgg > 4:301769/1‑127 (MQ=255) cTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAttt < 3:164568/149‑1 (MQ=255) aCGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCa < 4:112798/149‑1 (MQ=255) ggCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGTGAATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTc > 1:26880/1‑146 (MQ=255) cGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCgg > 8:220665/1‑118 (MQ=255) gAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAccc > 5:190783/1‑149 (MQ=255) gCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTTACCCTGAGCAATCC‑TGCCCAGATGTCGGTAACCGTGATTCTGTACAACTGACAGGTCATCACTGTTGAAGATGGCAAAACCGATGGCAGCGTCGATTTCCAGACCCCg < 7:46856/149‑1 (MQ=17) gCCCGGCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCGGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCg < 7:45436/149‑1 (MQ=255) cccGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCgg < 4:78494/149‑1 (MQ=255) ccGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCTTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGc < 2:203141/149‑1 (MQ=255) ccGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGc < 1:203365/149‑1 (MQ=255) g‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGa > 8:34828/1‑149 (MQ=255) g‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGa < 2:69055/149‑1 (MQ=255) a‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGt > 5:270034/1‑149 (MQ=39) cGAAGGCGGCGT‑TATCACTTACACCGTGACCCTGAGCAATCCATGCCCAGACGCCGGTAACCGTGACCCTGTCCAAc < 1:40972/77‑1 (MQ=11) cGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCt < 8:178173/149‑1 (MQ=39) gAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTa < 1:158377/149‑1 (MQ=39) aaGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGtt > 4:230982/1‑92 (MQ=255) ggcggcGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTacaa < 2:23150/149‑1 (MQ=39) ggcggcGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTacaa < 2:37654/149‑1 (MQ=39) gcggcgT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTacaac < 2:26880/149‑1 (MQ=38) t‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACaacaac > 6:301750/1‑146 (MQ=35) | TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGG‑TCA‑CCGAAGGCGGCGT‑AATCACCTACACCGTGACCCTGAGCAATCC‑TGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAAC > NC_002947/197034‑197323 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |