| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,551 | C→G | 9.3% | T1019T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,551 | 0 | C | G | 9.3% | 264.7 / 16.3 | 97 | T1019T (ACC→ACG) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (47/41); new base G (6/3); total (53/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.05e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.38e-01 | |||||||||||
GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGAC > NC_002947/197404‑197694 | gACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCa > 4:61105/1‑149 (MQ=37) aCCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCAt > 4:123437/1‑149 (MQ=37) cACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTa < 3:263475/149‑1 (MQ=37) cACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTa > 3:126605/1‑149 (MQ=37) cGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTAcc > 8:150109/1‑149 (MQ=37) gATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCg < 7:92513/149‑1 (MQ=37) aaCGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTg > 1:115189/1‑148 (MQ=37) gACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGc > 7:86429/1‑149 (MQ=37) tCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg > 3:21809/1‑149 (MQ=37) ggTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑a < 8:39112/149‑1 (MQ=37) aTGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCATACCATTAACGTTGAAGCAGTC‑AAGAc > 7:120809/1‑148 (MQ=255) aTGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGAcc > 6:139476/1‑149 (MQ=37) tGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGAccc < 5:277440/149‑1 (MQ=37) ccaccaCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAg < 3:123437/149‑1 (MQ=37) caccacCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAgg > 3:50079/1‑149 (MQ=37) caccacCGCGACCCTGACGGCGAGACCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACAGATGAAGCAGGC‑AAGCCCCAgg > 2:110574/1‑149 (MQ=11) accaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAggg < 4:126605/149‑1 (MQ=37) accaccGCGACCCTGACGGCGAGCCCGTAGGTCACCGAATGCGGCGTGATCACCTAAACCGTGATCCTGAGCAATCCTTCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAggg < 4:213666/149‑1 (MQ=255) caccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGACGGC‑AAGACCCAGGGCa > 4:16149/1‑149 (MQ=37) cTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCg > 8:33369/1‑115 (MQ=39) cTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCg < 7:33369/115‑1 (MQ=39) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTc > 5:28167/1‑147 (MQ=37) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCa < 5:139476/149‑1 (MQ=37) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCa < 7:150109/149‑1 (MQ=37) ggCGAGCCCGTCGGTCACTGAAGGAGGCGTGATCTCATACAAGGTTATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTGCTACGGCCAAATCATTACCGTTGAAGCCGTC‑AAGACCCAGGGCAGGGTCGATTTCCAGa < 4:50079/149‑1 (MQ=11) ccGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGc > 4:107002/1‑149 (MQ=37) cGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAt > 7:33797/1‑149 (MQ=37) ggTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAt < 4:61766/148‑1 (MQ=37) gTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGa < 8:220894/149‑1 (MQ=37) cACCTAAGTCGGAGAGATCACATACACAGTTATACTCAGCAATCCTGCCCAGACTCCGTTAACCGTGACACTGTCCAACGGCCAAACCATTACAGTTGAATCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGAc < 8:120809/148‑1 (MQ=11) cACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGAAATCCTGCCCAGACGCCCGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGCC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGCCg > 1:133987/1‑149 (MQ=255) aCCGAAGGCGGCGTTATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGc < 7:228687/105‑1 (MQ=255) aCCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGt > 4:276443/1‑149 (MQ=37) aCCGAAGGCGGCGTAATCACCTACACCGTGAACCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGc > 8:228687/1‑105 (MQ=255) ccGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCg > 5:92410/1‑123 (MQ=38) ccGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCg < 6:92410/123‑1 (MQ=38) ccGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTc > 6:68264/1‑149 (MQ=37) cGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAAACGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCAAGACCCCCGCGAATGACGTc > 6:28522/1‑148 (MQ=255) gAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTa < 8:86429/149‑1 (MQ=37) aaGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTa > 1:209579/1‑148 (MQ=37) aaGGCGCCGTGATCACCTACACCGTGATACTGAGCAATCCTGCCCAGACGCCGCAAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGAACCAGGCCAGCGTCGATTTCCa > 1:85256/1‑127 (MQ=11) gcggcgTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTaca‑ac < 7:242858/149‑1 (MQ=37) gcgTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACa‑acaac < 2:115189/149‑1 (MQ=37) aTCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTc > 7:257640/1‑149 (MQ=37) aCCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGa < 3:276443/148‑1 (MQ=37) ccTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGAcc < 4:21809/149‑2 (MQ=25) cTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTg > 2:24964/1‑149 (MQ=38) acacCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTACCCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCTGCCCCCGCCGAATGACGTCTAGA‑ACAACGGTTCGAGTggc > 2:87636/1‑147 (MQ=11) acacCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGt > 2:45066/1‑148 (MQ=39) acacCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACCGt > 7:252135/1‑148 (MQ=21) ccGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAATCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACCGTCAGc > 3:159524/1‑149 (MQ=21) ccGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGc > 1:100589/1‑149 (MQ=39) ccGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGc < 6:28167/149‑1 (MQ=39) cGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGTCCAAACCATTACCGTTGAAGCCTGC‑AAGACACAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGAATTTCATCg > 7:132481/1‑149 (MQ=11) cGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGt < 3:235969/69‑1 (MQ=40) cGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGt > 4:235969/1‑69 (MQ=40) gTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGctt > 3:278066/1‑147 (MQ=39) tGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGt > 7:10643/1‑148 (MQ=39) tGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACCGTCAGCGt > 4:156684/1‑148 (MQ=21) aTCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACCGTCAGCGTCa < 5:162294/148‑1 (MQ=18) tGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCa < 7:42345/138‑1 (MQ=37) tGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCa > 8:42345/1‑138 (MQ=37) aGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATc < 2:100589/147‑1 (MQ=37) gCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCgag < 2:209579/149‑1 (MQ=37) aaTCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCTTCACCATCGAGaa < 4:278066/149‑1 (MQ=37) aTCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAAc < 5:221370/149‑1 (MQ=37) tCCTGCCCAGACGCCGGTTACCGTGACCCTGTCCAACGGCAAAACGATTACCGTTGaa < 8:4943/58‑1 (MQ=17) tCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACATACAACGGTTCGACTGTCAGCGTCACCATCGAGAAc < 1:45066/149‑1 (MQ=255) tCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGAC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACCGTCAGCGTCACCATCGAGAACg > 6:106821/1‑149 (MQ=17) cccAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCcaca < 3:61105/149‑1 (MQ=37) cccAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCca < 5:68264/147‑1 (MQ=37) ccAGACGCCTGTAACCGTGACCCTGTCCAACGGACAAACCATTACCGTTGAAGCCGGA‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCcaca < 3:16149/148‑1 (MQ=255) cAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCt < 1:43616/103‑1 (MQ=35) cAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCt > 2:43616/1‑103 (MQ=35) cAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGAC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAgg < 5:106821/149‑1 (MQ=17) aGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCCCAGGc > 1:255598/1‑149 (MQ=17) gACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCg < 3:156684/149‑1 (MQ=17) aCGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCgg < 8:33797/149‑1 (MQ=17) aCGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCgg > 2:115826/1‑149 (MQ=17) cGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGC‑AAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑AAAACCGTTCGACTGTCAGCCTCACCATCGAGAACGCCACACGCgg > 8:258099/1‑148 (MQ=11) cGCCGGTAAGCGTGACCCTGTCCAAGGGCCAATCCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGAGCCGGGCGATTGACGTCTACA‑ACAACGGTTCGAGCGTCAGCGTCACCATCGAGAACGCCACAGGCGGt < 2:133987/149‑1 (MQ=11) cGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACCGTCAGCGTCCCCAGCGAGACCGCCACAGGCGGTAAt > 8:64241/1‑149 (MQ=255) ggTGACCGGGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGC‑AAAACCCAGGGCAGCGGCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAAtt < 7:258099/149‑1 (MQ=11) tAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTGACCATCGAGAACGCCACAGGCGGTAATTTc < 1:24964/149‑1 (MQ=25) tGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGC‑AAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCaa > 1:147348/1‑149 (MQ=12) cccTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGC‑AAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACt > 6:163449/1‑148 (MQ=12) cccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACt > 1:228587/1‑148 (MQ=32) cccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACt > 3:279939/1‑148 (MQ=32) ccTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGC‑AAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGa > 4:51948/1‑149 (MQ=12) tCCAACGGCCAAACCGTTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg < 8:112069/138‑1 (MQ=17) tCCAACGGCCAAACCGTTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg > 7:112069/1‑138 (MQ=17) aaCGGCCAAACGATTACCGTTGAAGCCGGCAAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCg > 1:41137/1‑148 (MQ=11) aaCGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAg < 8:190529/121‑1 (MQ=32) aaCGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAg > 7:190529/1‑121 (MQ=32) aCGGCCAAACGATTACCGTTGAAGCCGGC‑AAAACCCAGTGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAc < 5:163449/149‑1 (MQ=255) ccAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCCCAGGCGGTAATTTCGAGCAACTGCCCCCGAACCCGa > 3:220671/1‑149 (MQ=21) cAAACGATTACCGTTGAAGCCGGC‑AAAACCAAGGGCAGCGTCTACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGAc > 6:306918/1‑149 (MQ=11) | GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGAC > NC_002947/197404‑197694 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |