Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,173,833 | G→T | 9.6% | A65E (GCG→GAG) ‡ | PP_1926 ← | phosphotyrosine‑protein phosphatase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,173,833 | 0 | G | T | 9.6% | 159.5 / 6.8 | 52 | A65E (GCG→GAG) ‡ | PP_1926 | phosphotyrosine‑protein phosphatase |
Reads supporting (aligned to +/- strand): ref base G (26/21); new base T (2/3); total (28/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.52e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.64e-01 |
GATTGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTACGGCACCGGCCTGCTTGAGCGTATCCAGGCTTTCAGCGAGAGCGCTGGTCTGGGTGCCCGGACAAGGCGTAAAAATCA > NC_002947/2173694‑2173977 | gATTGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGcc > 2:159669/1‑147 (MQ=255) gCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCATCGCGGCCAAGca < 3:142695/148‑2 (MQ=255) cAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTggg > 2:35287/1‑149 (MQ=255) aGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGTTCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGc < 2:184467/149‑1 (MQ=255) aGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCACCCCATGCTGCTTGGCCGCGATGCCAACATggg > 8:214926/1‑148 (MQ=255) aGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTggg > 4:284429/1‑148 (MQ=255) aGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGc < 6:140765/149‑1 (MQ=255) ggCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCaa < 1:159669/149‑1 (MQ=255) cTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCATCGCGGCCAAGcagc < 6:254660/142‑4 (MQ=255) cTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCATCGCGGCCAAGcagc < 6:250521/142‑4 (MQ=255) cTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCATCGCGGCCAAGcagc > 5:254660/1‑139 (MQ=255) cTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCATCGCGGCCAAGcagc > 5:250521/1‑139 (MQ=255) aaGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTcc < 3:284429/149‑1 (MQ=255) aaGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGctct < 7:214926/149‑1 (MQ=255) gTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGt > 5:240974/1‑149 (MQ=255) gccAACTGTTGGCGAATCTCTACCAGCCGAGACTCGAAGTTTTTATCAGGAGCCTGATCATCCTCGATCGGCAGCGTGAACCCCTCCAACCCATTCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTc < 4:278987/148‑1 (MQ=255) cAACTGGTGGCGAATCTCTCCCAGCCTAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGGAACTCCGTTTTCCTGAAGCTCTGCGTcc < 2:90312/148‑1 (MQ=255) gtggCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACAt > 8:88103/1‑147 (MQ=255) aaTCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTaa < 4:144371/149‑1 (MQ=255) aTCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTaa > 4:234531/1‑148 (MQ=255) aTCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAAc < 7:61097/149‑1 (MQ=255) tctctcCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAAc > 6:185729/1‑148 (MQ=255) tcCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAgcg > 7:54058/1‑149 (MQ=255) ccAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAgcgc > 8:40902/1‑148 (MQ=255) ccAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCt < 3:234531/149‑1 (MQ=255) ccGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTAc < 8:155184/147‑1 (MQ=255) ccGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTAc > 7:155184/1‑147 (MQ=255) tCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGt > 6:38594/1‑97 (MQ=255) tCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGt < 5:38594/97‑1 (MQ=255) gTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTACGGCACCGGCCTgat > 1:210425/1‑147 (MQ=255) aggatGATCAGGCTCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTACGGCACCGGCCTGCt > 8:237321/5‑149 (MQ=255) ttttGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTACg > 2:216696/1‑135 (MQ=255) ttttGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCCTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTACg < 1:216696/135‑1 (MQ=255) ttGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTACGGCACCGGCCTGCtt > 5:94106/1‑147 (MQ=255) aTCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTACGGCACCGGCCTGCTTGAGc < 7:88103/148‑1 (MQ=255) aTCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTACGGCACCGGCCTGCTTGAGc < 6:240974/148‑1 (MQ=255) tCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTACGGCACCGGCCTGCTTGAGc < 4:211940/147‑1 (MQ=255) tCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTACGGCACCGGCCTGCTTGAGc > 3:211940/1‑147 (MQ=255) ccTCGATCGGCACCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACACCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTACGGCACCGGCCTGCTTGAGCGTATCCAGGCTTTCAGc > 4:122849/1‑148 (MQ=255) cTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTAc < 3:16416/111‑1 (MQ=255) cTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTAc > 4:16416/1‑111 (MQ=255) tCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTACGGCACCGGCCTGCTTGAGCGTATCCAGGCTTTCAGc > 5:277704/1‑146 (MQ=255) cGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTACGGCACCGGCCTGCTTGAGCGTATCCAGGCTTTCAGCgaga > 7:274821/1‑149 (MQ=255) tGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTACGGCACCGGCCTGCTTGAGCGTATCCAGGCTTTCAGCGAGAGCGCTGGTCTg > 3:294373/1‑149 (MQ=255) cAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTACGGCACCGGCCTGCTTGAGCGTATCCAGGCTTTCAGCGAGAGCGCTGGTCTGGGTGCCCGGa > 7:106467/1‑148 (MQ=255) cAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTACGGCACCGGCCTGCTTGAGCGTATCCAGGCTTTCAGCGAGAGCGCTGGTCTGGGTGCCCGGa > 6:137317/1‑148 (MQ=255) ccATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTACGGCACCGGCCTGCTTGAGCGTATCCAGGCTTTCAGCGAGAGCGCTGGTCTGGGTGCCCGGACAAgg < 8:54058/149‑1 (MQ=255) cATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTACGGCACCGGCCTGCTTGAGCGTATCCAGGCTTTCAGCGAGAGCGCTGGTCTGGGTGCCCGGACAAGGc > 5:1279/1‑149 (MQ=255) aTGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTACGGCACCGGCCTGCTTGAGCGTATCCAGGCTTTCAGCGAGAGCGCTGGTCTGGGTGCCCGGACAAGGCg > 2:277155/1‑149 (MQ=255) tgctgcTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTACGGCACCGGCCTGCTTGAGCGTATCCAGGCTTTCAGCGAGAGCGCTGGTCTGGGTGCCCGGACAAGGCGt < 8:106467/149‑1 (MQ=255) gCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTACGGCACCGGCCTGCTTGAGCGTATCCAGGCTTTCAGCGAGAGCGCTGGTCTGGGTGCCCGGACAAGGCGTAAAAATCa < 1:35287/148‑1 (MQ=255) gCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTACGGCACCGGCCTGCTTGAGCGTATCCAGGCTTTCAGCGAGAGCGCTGGTCTGGGTGCCCGGACAAGGCGTAAAAATCa < 5:185729/148‑1 (MQ=255) | GATTGCCAGGGCCTTGTTGGAAGCGAGCAAAGCGTCCAACTGGTGGCGAATCTCTCCCAGCCGAGCCTCGAAGTTTTGATCAGGAGCCTGATCATCCTCGATCGGCAGCTGGAACCACTCCAACCCATGCTGCTTGGCCGCGATGCCAAGCTGGGCAACTCCGTTTTCCTGAAGCTCTGCGTCCGACATCAGCGTAACAAGCGCTACGGCACCGGCCTGCTTGAGCGTATCCAGGCTTTCAGCGAGAGCGCTGGTCTGGGTGCCCGGACAAGGCGTAAAAATCA > NC_002947/2173694‑2173977 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |