Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,259,590 | A→G | 12.3% | S60G (AGC→GGC) | fimV → | motility protein FimV |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,259,590 | 0 | A | G | 12.3% | 139.9 / 10.6 | 57 | S60G (AGC→GGC) | fimV | motility protein FimV |
Reads supporting (aligned to +/- strand): ref base A (23/27); new base G (3/4); total (26/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.38e-01 |
ATGGCTGCAGCATCCGCGCTGTCGTCTGGCATGGCGAATGCGCTGGGCCTGGGGGAGCTGACCCTGAAGTCGGCACAGAATCAGCCGCTGGACGCCGAGATCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTCCGACCTACCTCGAAGACCTGACCTTCACACCGGTGATCAACCCCAACGGCAAAAGTGTGCTGCGCGTGACCTCCAGTCAGCCGCTGCCAGGTCCGGTGGTCAA > NC_002947/2259443‑2259738 | aTGGCTGCAGCATCCGCGCTGTCGTCTGGCATGGCGAATGCGCTGGGCCTGGGGGAGCTGACCCTGAAGTCGGCACAGAATCAGCCGCTGGACGCCGAGATCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAg > 3:175682/1‑149 (MQ=255) cTGCAGCATCCGCGCTGTCGTCTGGCATGGCGAATGCGCTGGGCCTGGGGGAGCTGACCCTGAAGTCGGCACAGAATCAGCCGCTGGACGCCGAGATCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTg < 2:35207/149‑1 (MQ=255) tCCGCGCTGTCGTCTGGCATGGCGAATGCGCTGGGCCTGGGGGAGCTGACCCTGAAGTCGGCACAGAATCAGCCGCTGGACGCCGAGATCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCAcc < 7:127090/149‑1 (MQ=255) ccGCGCTGTCGTCTGGCATGGCGAATGCGCTGGGCCTGGGGGAGCTGACCCTGAAGTCGGCACAGAATCAGCCGCTGGACGCCGAGATCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCg > 2:101062/1‑149 (MQ=255) cgcgCTGTCGTCTGGCATGGCGAATGCGCTGGGCCTGGGGGAGCTGACCCTGAAGTCGGCACAGAATCAGCCGCTGGACGCCGAGATCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCAGGCTCGGCGCCActtc < 3:9634/149‑4 (MQ=255) cgcgCTGTCGTCTGGCATGGCGAATGCGCTGGGCCTGGGGGAGCTGACCCTGAAGTCGGCACAGAATCAGCCGCTGGACGCCGAGATCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCAGGCTCGGCGCCActtc < 3:13889/149‑4 (MQ=255) cgcTGTCGTCTGGCATGGCGAATGCGCTGGGCCTGGGGGAGCTGACCCTGAAGTCGGCACAGAATCAGCCGCTGGACGCCGAGATCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGaa < 2:118492/149‑1 (MQ=255) cTGTCGTCTGGCATGGCGAATGCGCTGGGCCTGGGGGAGCTGACCCTGAAGTCGGCACAGAATCAGCCGCTGGACGCCGAGATCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAaga < 1:101062/149‑1 (MQ=255) tcgtcTGGCATGGCGAATGCGCTGGGCCTGGGGGAGCTGACCCTGAAGTCGGCACAGAATCAGCCGCTGGACGCCGAGATCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGtt < 3:186399/149‑1 (MQ=255) gtcTGGCATGGCGAATGCGCTGGGCCTGGGGGAGCTGACCCTGAAGTCGGCACAGAATCAGCCGCTGGACGCCGAGATCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTc < 1:208983/148‑1 (MQ=255) tcTGGCATGGCGAATGCGCTGGGCCTGGGGGAGCTGACCCTGAAGTCGGCACAGAATCAGCCGCTGGACGCCGAGATCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAg > 2:180038/1‑149 (MQ=255) gCATGGCGAATGCGCTGGGCCTGGGGGAGCTGACCCTGAAGTCGGCACAGAATCAGCCGCTGGACGCCGAGATCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAGc < 1:180038/146‑1 (MQ=255) cGAATGCGCTGGGCCTGGGGGAGCTGACCCTGAAGTCGGCACAGAATCAGCCGCTGGACGCCGAGATCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCggg > 2:244513/1‑149 (MQ=255) ccTGGGGGAGCTGACCCTGAAGTCGGCACAGAATCAGCCGCTGGACGCCGAGATCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTCCGa > 2:71521/1‑149 (MQ=255) gggAGCTGACCCTGAAGTCGGCACAGAATCAGCCGCTGGACGCCGAGATCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTCCGacctac < 8:180344/149‑1 (MQ=255) gCTGACCCTGAAGTCGGCACAGAATCAGCCGCTGGACGCCGAGATGGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTCCGACCTACCTc > 1:216444/1‑148 (MQ=255) gACCCTGAAGTCGGCACAGAATCAGCCGCTGGACGCCGAGATCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCa > 6:10115/1‑113 (MQ=255) gACCCTGAAGTCGGCACAGAATCAGCCGCTGGACGCCGAGATCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCa < 5:10115/113‑1 (MQ=255) aCCCTGAAGTCGGCACAGAATCAGCCGCTGGACGCCGAGATCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTCCGACCTACCTCGaa < 6:131224/147‑1 (MQ=255) aCCCTGAAGTCGGCACAGAATCAGCCGCTGGACGCCGAGATCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTCCGACCTACCTCGAAga > 4:87165/1‑149 (MQ=255) ccTGAAGTCGGCACAGAATCAGCCGCTGGACGCCGAGATCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTCCGACCTACCTCGAAgacc > 8:29378/1‑149 (MQ=255) ccTGAAGTCGGCACAGAATCAGCCGCTGGACGCCGAGATCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTCCGACCTACCTCGAAgacc > 6:299199/1‑149 (MQ=255) ccTGAAGTCGGCACAGAATCAGCCGCTGGACGCCGAGATCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTCCGACCTACCTCGAAgacc > 3:207603/1‑149 (MQ=255) tGAAGTCGGCACAGAATCAGCCGCTGGACGCCGAGATCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTcc < 6:244818/130‑1 (MQ=255) tGAAGTCGGCACAGAATCAGCCGCTGGACGCCGAGATCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTcc > 5:244818/1‑130 (MQ=255) tGAAGTCGGCACAGAATCAGCCGCTGGACGCCGAGATCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTCCGa > 4:169699/1‑132 (MQ=255) tGAAGTCGGCACAGAATCAGCCGCTGGACGCCGAGATCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTCCGa < 3:169699/132‑1 (MQ=255) gAAGTCGGCACAGAATCAGCCGCTGGACGCCGAGATCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGaa < 8:130860/100‑1 (MQ=255) aaGTCGGCACAGAATCAGCCGCTGGACGCCGAGATCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTCCGACCTACCTCGAAgacctgac < 7:29378/149‑1 (MQ=255) aaGTCGGCACAGAATCAGCCGCTGGACGCCGAGATCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTCCGACCTACATCGAAgacctgac < 1:244513/149‑1 (MQ=255) ggaacaGAAGCAGCCGCTGGACGCCTAGATCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTCCGACCTACCTCGAAGACCTGACCTTca < 4:218770/146‑1 (MQ=255) gCACAGAATCAGCCGCTGGACGCCGAGATCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTCCGACCTACCTCGAAGACCTGACCTTca > 4:75131/1‑148 (MQ=255) ccGCTGGACGCCGAGATCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTCCGACCTACCTCGAAGACCTGACCTTCACACCGGTGATCaa < 7:64822/149‑1 (MQ=255) cGCTGGACGCCGAGATCTAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTCCGACCTACCTCGAAGACCTGACCTTCACACCGGTGATCAAc < 4:22410/149‑1 (MQ=255) cGCTGGACGCCGAGATCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTCCGACCTACCTCGAAGACCTGACCTTCACACCGGTGATCAAc < 2:216444/149‑1 (MQ=255) cTGGACGCCGAGATCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTcc < 5:141818/107‑1 (MQ=255) cTGGACGCCGAGATCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTcc > 6:141818/1‑107 (MQ=255) cTGGACGCCGAGATCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTCCGACCTACCTCGAAGACCTGACCTTCACACCGGTGATCAAccc < 4:129710/149‑1 (MQ=255) gACGCCGAGATCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTCCGACCTACCTCGAAGACCTGACCTTCACACCGGTGATCAACCCCaa > 8:10216/1‑149 (MQ=255) tCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTCCGACCTACCTCGAAGACCTGACCTTCACACCGGTGATCAACCCCAACGGCAAAAgt < 7:10216/149‑1 (MQ=255) gAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTCCGACCTACCTCGaa < 8:82891/105‑1 (MQ=255) gAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTCCGACCTACCTCGaa > 7:82891/1‑105 (MQ=255) gAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTCCGACCTACCTCGAAGCCCTGACCTTCACACCGGTGCTCACCCCCAACGGCAAAAgtgt > 4:8240/1‑149 (MQ=255) aaTTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTCCGACCTACCTCGAAGACCTGACCTTCACACCGGTGATCAACCCCAACGGCAAAAGtgtg < 4:175682/149‑1 (MQ=255) cTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTCCGACCTACCTCGAAGACCTGACCTTCACACCGGTGATCAACCCCAACgg > 7:190478/1‑134 (MQ=255) cTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTCCGACCTACCTCGAAGACCTGACCTTCACACCGGTGATCAACCCCAACgg < 8:190478/134‑1 (MQ=255) aCCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTCCGACCTACCTCGAAGACCTGACCTTCACACCGGTGATCAACCCCAACGGCAAAAGTGTGCTGCGCGTGACCTCCAGt < 3:75131/149‑1 (MQ=255) tCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTCCGACCTACCTCGAAGACCTGACCTTCACACCGGTGATCAACCCCAACGGCAAAAGTGTGCTGCGCGTGACCTCCAGTCAg > 4:283818/1‑149 (MQ=255) ttccggTGGCGCCAGGCTCGGCGCCACTGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTCCGACCTACCTCGAAGACCTGACCTTCACACCGGTGATCAACCCCAACGGCAAAAGTGTGCTGCGCGTGACCTCCa > 2:251069/6‑135 (MQ=255) ttccggTGGCGCCAGGCTCGGCGCCACTGGAAGAGTTCACCAAGGCCGGGGTGGCGTTTCCGACCTACCTCGAAGACCTGACCTTCACACCGGTGATCAACCCCAACGGCAAAAGTGTGCTGCGCGTGACCTCCa < 1:251069/130‑1 (MQ=255) ccgAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTCCGACCTACCTCGAAGACCTGACCTTCACACCGGTGATCAACCCCAACGGCAAAAGTGTGCTGCGCGTGACCTCCAGTCAGCCGCTGc > 6:80070/1‑147 (MQ=255) gAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTCCGACCTACCTCGAAGACCTGACCTTCACACCGGTGATCAACCCCAACGGCAAAAGTGTGCTGCGCGTGACCTCCAGTCAGCCGCTGCCAgg > 7:237972/1‑149 (MQ=255) ggTGGCGCCAGGCTCGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTCCGACCTACCTCGAAGACCTGACCTTCACACCGGTGATCAACCCCAACGGCAAAAGTGTGCTGCGCGTGa < 6:91624/124‑1 (MQ=255) ggTGGCGCCAGGCTCGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTCCGACCTACCTCGAAGACCTGACCTTCACACCGGTGATCAACCCCAACGGCAAAAGTGTGCTGCGCGTGa > 5:91624/2‑125 (MQ=255) gTGGCGCCAGGCTCGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTCCGACCTACCTCGAAGACCTGACCTTCACACCGGTGATCAACCCCAACGGCAAAAGTGTGCTGCGCGTGACCTCCAGTCAGCCGCTGCCAGGTcc > 1:305065/1‑149 (MQ=255) tGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTCCGACCTACCTCGAAGACCTGACCTTCACACCGGTGATCAACCCCAACGGCAAAAGTGTGCTGCGCGTGACCTCCAGTCAGCCGCTGCCAGGTCCg < 8:237972/149‑1 (MQ=255) cGAGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTCCGACCTACCTCGAAGACCTGACCTTCACACCGGTGATCATCCCCAACGGCAACAGTGTGCTGCGCGTGACCTCCAGTCAGCCGCTGCCAGGTCCggtggt > 7:65045/1‑148 (MQ=255) aGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTCCGACCTACCTCGAAGACCTGACCTTCACACCGGTGATCAACCCCAACGGCAAAAGTGTGCTGCGCGTGACCTCCAGTCAGCCGCTGCCAGGTCCGGTGGTCaa < 5:80070/149‑1 (MQ=255) | ATGGCTGCAGCATCCGCGCTGTCGTCTGGCATGGCGAATGCGCTGGGCCTGGGGGAGCTGACCCTGAAGTCGGCACAGAATCAGCCGCTGGACGCCGAGATCGAATTGCTCGACGTGCGCGACCTCAAAGCCGCCGAAGTGGCGCCGAGCCTGGCGCCACCGGAAGAGTTCAGCAAGGCCGGGGTGGCGTTTCCGACCTACCTCGAAGACCTGACCTTCACACCGGTGATCAACCCCAACGGCAAAAGTGTGCTGCGCGTGACCTCCAGTCAGCCGCTGCCAGGTCCGGTGGTCAA > NC_002947/2259443‑2259738 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |