| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,590 | T→C | 20.4% | D1032D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,590 | 0 | T | C | 20.4% | 173.7 / 38.4 | 88 | D1032D (GAT→GAC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base T (37/33); new base C (13/5); total (50/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.85e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCAT‑CGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTAC > NC_002947/197447‑197736 | aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTc > 5:28167/1‑147 (MQ=37)aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCa < 7:150109/149‑1 (MQ=37)aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCa < 5:139476/149‑1 (MQ=37) ggCGAGCCCGTCGGTCACTGAAGGAGGCGTGATCTCATACAAGGTTATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTGCTACGGCCAAATCATTACCGTTGAAGCCGTC‑AAGACCCAGGGCAGGGTCGATTTCCAGa < 4:50079/149‑1 (MQ=11) ccGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGc > 4:107002/1‑149 (MQ=37) cGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAt > 7:33797/1‑149 (MQ=37) ggTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAt < 4:61766/148‑1 (MQ=37) gTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGa < 8:220894/149‑1 (MQ=37) cACCTAAGTCGGAGAGATCACATACACAGTTATACTCAGCAATCCTGCCCAGACTCCGTTAACCGTGACACTGTCCAACGGCCAAACCATTACAGTTGAATCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGAc < 8:120809/148‑1 (MQ=11) cACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGAAATCCTGCCCAGACGCCCGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGCC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGCCg > 1:133987/1‑149 (MQ=255) aCCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGt > 4:276443/1‑149 (MQ=37) ccGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTc > 6:68264/1‑149 (MQ=37) cGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAAACGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCAAGACCCCCGCGAATGACGTc > 6:28522/1‑148 (MQ=255) gAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTa < 8:86429/149‑1 (MQ=37) aaGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTa > 1:209579/1‑148 (MQ=37) aaGGCGCCGTGATCACCTACACCGTGATACTGAGCAATCCTGCCCAGACGCCGCAAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGAACCAGGCCAGCGTCGATTTCCa > 1:85256/1‑127 (MQ=11) gcggcgTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTaca‑ac < 7:242858/149‑1 (MQ=37) gcgTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACa‑acaac < 2:115189/149‑1 (MQ=37) aTCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTc > 7:257640/1‑149 (MQ=37) aCCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGa < 3:276443/148‑1 (MQ=37) ccTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGAcc < 4:21809/149‑2 (MQ=25) cTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTg > 2:24964/1‑149 (MQ=38) acacCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTACCCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCTGCCCCCGCCGAATGACGTCTAGA‑ACAACGGTTCGAGTggc > 2:87636/1‑147 (MQ=11) acacCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGt > 2:45066/1‑148 (MQ=39) acacCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACCGt > 7:252135/1‑148 (MQ=21) ccGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAATCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACCGTCAGc > 3:159524/1‑149 (MQ=21) ccGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGc > 1:100589/1‑149 (MQ=39) ccGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGc < 6:28167/149‑1 (MQ=39) cGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGTCCAAACCATTACCGTTGAAGCCTGC‑AAGACACAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGAATTTCATCg > 7:132481/1‑149 (MQ=11) gTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGctt > 3:278066/1‑147 (MQ=39) tGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGt > 7:10643/1‑148 (MQ=39) tGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACCGTCAGCGt > 4:156684/1‑148 (MQ=21) aTCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACCGTCAGCGTCa < 5:162294/148‑1 (MQ=18) tGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCa > 8:42345/1‑138 (MQ=37) tGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCa < 7:42345/138‑1 (MQ=37) aGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCAT‑c < 2:100589/147‑1 (MQ=37) gCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCAT‑Cgag < 2:209579/149‑1 (MQ=37) aaTCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCTTCACCAT‑CGAGaa < 4:278066/149‑1 (MQ=37) aTCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCAT‑CGAGAAc < 5:221370/149‑1 (MQ=37) tCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACATACAACGGTTCGACTGTCAGCGTCACCAT‑CGAGAAc < 1:45066/149‑1 (MQ=255) tCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGAC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACCGTCAGCGTCACCAT‑CGAGAACg > 6:106821/1‑149 (MQ=17) cccAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCAT‑CGAGAACGCcaca < 3:61105/149‑1 (MQ=37) cccAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCAT‑CGAGAACGCca < 5:68264/147‑1 (MQ=37) ccAGACGCCTGTAACCGTGACCCTGTCCAACGGACAAACCATTACCGTTGAAGCCGGA‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCAT‑CGAGAACGCcaca < 3:16149/148‑1 (MQ=255) cAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCt < 1:43616/103‑1 (MQ=35) cAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCt > 2:43616/1‑103 (MQ=35) cAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGAC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACCGTCAGCGTCACCAT‑CGAGAACGCCACAgg < 5:106821/149‑1 (MQ=17) aGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACCGTCAGCGTCACCAT‑CGAGAACGCCCCAGGc > 1:255598/1‑149 (MQ=17) gACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACCGTCAGCGTCACCAT‑CGAGAACGCCACAGGCg < 3:156684/149‑1 (MQ=17) aCGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACCGTCAGCGTCACCAT‑CGAGAACGCCACAGGCgg > 2:115826/1‑149 (MQ=17) aCGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACCGTCAGCGTCACCAT‑CGAGAACGCCACAGGCgg < 8:33797/149‑1 (MQ=17) cGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGC‑AAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑AAAACCGTTCGACTGTCAGCCTCACCAT‑CGAGAACGCCACACGCgg > 8:258099/1‑148 (MQ=11) cGCCGGTAAGCGTGACCCTGTCCAAGGGCCAATCCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGAGCCGGGCGATTGACGTCTACA‑ACAACGGTTCGAGCGTCAGCGTCACCAT‑CGAGAACGCCACAGGCGGt < 2:133987/149‑1 (MQ=11) cGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACCGTCAGCGTCCCCAG‑CGAGACCGCCACAGGCGGTAAt > 8:64241/1‑149 (MQ=255) ggTGACCGGGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGC‑AAAACCCAGGGCAGCGGCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCAT‑CGAGAACGCCACAGGCGGTAAtt < 7:258099/149‑1 (MQ=11) tAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTGACCAT‑CGAGAACGCCACAGGCGGTAATTTc < 1:24964/149‑1 (MQ=25) tGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGC‑AAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCAT‑CGAGAACGCCACAGGCGGTAATTTCGAGCaa > 1:147348/1‑149 (MQ=12) cccTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGC‑AAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCAT‑CGAGAACGCCACAGGCGGTAATTTCGAGCAACt > 6:163449/1‑148 (MQ=12) cccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCAT‑CGAGAACGCCACAGGCGGTAATTTCGAGCAACt > 3:279939/1‑148 (MQ=32) cccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCAT‑CGAGAACGCCACAGGCGGTAATTTCGAGCAACt > 1:228587/1‑148 (MQ=32) ccTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGC‑AAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCAT‑CGAGAACGCCACAGGCGGTAATTTCGAGCAACTGa > 4:51948/1‑149 (MQ=12) tCCAACGGCCAAACCGTTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCAT‑CGAGAACGCCACAGGCGGTAATTTCGAg < 8:112069/138‑1 (MQ=17) tCCAACGGCCAAACCGTTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCAT‑CGAGAACGCCACAGGCGGTAATTTCGAg > 7:112069/1‑138 (MQ=17) aaCGGCCAAACGATTACCGTTGAAGCCGGCAAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCAT‑CGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCg > 1:41137/1‑148 (MQ=11) aaCGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCAT‑CGAGAACGCCACAg < 8:190529/121‑1 (MQ=32) aaCGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCAT‑CGAGAACGCCACAg > 7:190529/1‑121 (MQ=32) aCGGCCAAACGATTACCGTTGAAGCCGGC‑AAAACCCAGTGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCAT‑CGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAc < 5:163449/149‑1 (MQ=255) ccAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCAT‑CGAGAACGCCCCAGGCGGTAATTTCGAGCAACTGCCCCCGAACCCGa > 3:220671/1‑149 (MQ=21) cAAACGATTACCGTTGAAGCCGGC‑AAAACCAAGGGCAGCGTCTACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCAT‑CGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGAc > 6:306918/1‑149 (MQ=11) acgaTTACCGTTGAAGCCGGC‑AAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCAT‑CGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGAcccc > 7:113398/4‑149 (MQ=255) ccGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCAT‑CGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCt > 8:48126/1‑146 (MQ=37) ccGTTGAAGCCGGC‑AAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCAT‑CGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCt > 4:212530/1‑146 (MQ=12) ccGTTGAAGCCGGC‑AAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCAT‑CGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCt > 4:144429/1‑146 (MQ=12) ccGTTGAAGCCGGC‑AAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCAT‑CGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCt > 8:105216/1‑146 (MQ=12) ccGTTGAAGCCGGC‑AAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCAT‑CGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAg > 3:249100/1‑149 (MQ=12) ccGTGGAAGCCGGC‑AAAACCCACGGCAGCGTCGACATCCACACCCCGGCTAATCACGTCTACA‑ACAACGGTTCGACTGTCAGCCTCACCAT‑CGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGACCCCGACCCCGGCTCa < 8:143118/148‑1 (MQ=11) gTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGa < 1:87636/149‑1 (MQ=255) gAAGCCGGC‑AAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCAT‑CGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCAc > 4:154795/1‑149 (MQ=12) gCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCCCCAT‑CGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCg > 5:309285/1‑135 (MQ=37) gCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCAT‑CGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCg < 6:309285/135‑1 (MQ=37) gCCGGC‑AAAACACAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCAT‑CGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGAt < 4:5505/149‑1 (MQ=255) ccGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCAT‑CGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGAt > 6:264466/1‑148 (MQ=37) gC‑AAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCAT‑CGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCaac < 4:20559/149‑3 (MQ=2) gC‑AAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACAGTCAGCGTCACGAT‑CGAGAACGCCACAGTCTGTAATTTCGAGCAACTGACCCCGAACCCGACACCGGCTCAGACAACGATCaac > 2:119301/1‑147 (MQ=11) aCCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCAT‑CGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTc < 8:10643/149‑1 (MQ=39) aCCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCAT‑CGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTc > 5:263/1‑149 (MQ=39) cccAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCAT‑CGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCg > 6:93748/1‑149 (MQ=39) gATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCAT‑CGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCactac > 7:220410/1‑149 (MQ=39) | ACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCAT‑CGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTAC > NC_002947/197447‑197736 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |