Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,438,880 | G→A | 6.8% | P600P (CCG→CCA) | fadB → | enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,438,880 | 0 | G | A | 6.8% | 170.3 / 2.3 | 59 | P600P (CCG→CCA) | fadB | enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase |
Reads supporting (aligned to +/- strand): ref base G (27/28); new base A (2/2); total (29/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.82e-01 |
GTGACGTCATGGCCGAAGGCTTCCCGGATCGCATGAAGGACGAGCGCCGCTCGGCAGTCGACGCGTTGTACGAGGCCAACCGCCTGGGCCAGAAGAACGGTAAGGGCTTCTACGCCTACGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAACCGATCGTGTTCGAGCAGCGTGAAGTCACTGACGAAGACATCATCAACTGGATGATGGTCCCGCTGTGCCTTGAGACCGTGCGTTGCCTGGAAGACGGCATCGTCGA > NC_002947/2438738‑2439026 | gTGACGTCATGGCCGAAGGCTTCCCGGATCGCATGAAGGACGAGCGCCGCTCGGCAGTCGACGCGTTGTACGAGGCCAACCGCCTGGGCCAGAAGAACGGTAAGGGCTTCTACGCCTACGAAACCGACAAGCGCGGCAAGCCGaagaag < 6:136230/149‑1 (MQ=255) aTGGCCGAAGGCTTCCCGGATCGCATGAAGGACGAGCGCCGCTCGGCAGTCGACGCGTTGTACGAGGCCAACCGCCTGGGCCAGAAGAACGGTAAGGGCTTCTACGCCTACGAAACCGACAAGCGCGGCAAGCCAAAGAAGGTCTTCGa > 3:24349/1‑149 (MQ=255) aTGGCCGAAGGCTTCCCGGATCGCATGAAGGACGAGCGCCGCTCGGCAGTCGACGCGTTGTACGAGGCCAACCGCCTGGGCCAGAAGAACGGTAAGGGCTTCTACGCCTACGAAACCGACAAGCGCGGCAAGCCAAAGAAGGTCTTCGa > 3:20337/1‑149 (MQ=255) cccaaGGCTTCACGGATCGCATGAAGGACGAGCGCCGCTAGGCAGTCGACGCGTTGTACGATGCAAACCGCCTGGCCCAGAAGAACGGTAAGGGCTTCTACGCCTACGAAACCGACAAGCGCCGCAAGCCGAAGAAGGACTTCGATGc > 2:105725/4‑148 (MQ=255) aaGGCTTCCCGGATCGCATGAAGGACGAGCGCCGCTCGGCAGTCGACGCGTTGTACGAGGCCAACCGCCTGGGCCAGAAGAACGGTAAGGGCTTCTACGCCTACGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCAcc < 5:241583/149‑1 (MQ=255) ttCCCGGATCGCATGAAGGACGAGCGCCGCTCGGCAGTCGACGCGTTGTACGAGGCCAACCGCCTGGGCCAGAAGAACGGTAAGGGCTTCTACGCCTACGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCt > 5:227023/1‑149 (MQ=255) ttCCCGGATCGCATGAAGGACGAGCGCCGCTCGGCAGTCGACGCGTAGTACGAGGCCAACCGCCTGGGCCAGAAGAACGGTAAGGGCTTCTACGCCTACGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCt > 3:269564/1‑149 (MQ=255) ccGGATCGCATGAAGGACGAGCGCCGCTCGGCAGTCGACGCGTTGTACGAGGCCAACCGCCTGGGCCAGAAGAACGGTAAGGGCTTCTACGCCTACGAACCCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCt > 8:121071/1‑146 (MQ=255) ccGGATCGCATGAAGGACGAGCGCCGCTCGGCAGTCGACGCGTTGTACGAGGCCAACCGCCTGGGCCAGAAGAACGGTAAGGGCTTCTACGCCTACGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCt < 7:121071/146‑1 (MQ=255) ccGGATCGCATGAAGGACGAGCGCCGATAGGCAGTCGACGCGTTGTACGAGGCCAACCGCCTGGGCCAGAAGAACGGTAAGGGCTTCTACGCCTACGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGa > 2:221841/1‑149 (MQ=255) ggATCGCATGAAGGACGAGCGCCGCTCGGCAGTCGACGCGTTGTACGAGGCCAACCGCCTGGGCCAGAAGAACGGTAAGGGCTTCTACGCCTACGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACg > 4:77962/1‑149 (MQ=255) tCGCATGAAGGACGAGCGCCGCTCGGCAGTCGACGCGTTGTACGAGGCCAACCGCCTGGGCCAGAAGAACGGTAAGGGCTTCTACGCCTACGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGc < 8:137906/149‑1 (MQ=255) aTGAAGGACGAGCGCCGCTCGGCAGTCGACGCGTTGTACGAGGCCAACCGCCTGGGCCAGAAGAACGGTAAGGGCTTCTACGCCTACGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCa > 5:169130/1‑148 (MQ=255) aaGGACGAGCGCCGCTCGGCAGTCGACGCGTTGTACGAGGCCAACCGCCTGGGCCAGAAGAACGGTAAGGGCTTCTACGCCTACGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACTTTCTCAAAc < 8:182621/148‑1 (MQ=255) ggACGAGCGCCGCTCGGCAGTCGACGCGTTGTACGAGGCCAACCGCCTGGGCCAGAAGAACGGTAAGGGCTTCTACGCCTACGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCACACCGa > 5:305624/1‑149 (MQ=255) aCGAGCGCCGCTCGGCAGTCGACGCGTTGTACGAGGCCAACCGCCTGGGCCAGAAGAACGGTAAGGGCTTCTACGCCGACGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAACCGCTc > 1:81061/1‑149 (MQ=255) aCGAGCGCCGCTCGGCAGTCGACGCGTTGTACGAGGCCAACCGCCTGGGCCAGAAGAACGGTAACGGCTTCTACGCCTACGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAACCGATc < 4:171151/149‑1 (MQ=255) cGAGCGCCGCTCGGCAGTCGACGCGTTGTACGAGGCCAACCGCCTGGGCCAGAAGAACGGTAAGGGCTTCTACGCCTACGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAACCGATCg > 1:39635/1‑149 (MQ=255) cgcTCGGCAGTCGACGCGTTGTACGAGGCCAACCGCCTGGGCCAGAAGAACGGTAAGGGCTTCTACGCCTACGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAACCGATCGTGTTCGa < 6:169130/149‑1 (MQ=255) ggCAGTCGACGCGTTGTACGAGGCCAACCGCCTGGGCCAGAAGAACGGTAAGGGCTTCTACGCCTACGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAACCGATCGTGTTCGagcagc > 7:124983/1‑149 (MQ=255) aGTCGACGCGTTGTACGAGGCCAACCGCCTGGGCCAGAAGAACGGTAAGGGCTTCTACGCCTACGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAACAGATCGTGTTCGAGCAGCGt > 2:20558/1‑148 (MQ=255) tCGACGCGTTGTACGAGGCCAACCGGCTGGGCCAGACGAACGGTTAGGGCTTCTACGCGTACGATACCGACAAGCGCGGCAAGCCAAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAACCGATCGTGTTCGAGCAGCGTGaa < 4:20337/149‑1 (MQ=255) tCGACGCGTTGTACGAGGCCAACCGCCTGGGCCAGAAGAACGGTAAGGGCTTCTACGCCTACGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAACCGATCGTGTTCGAGCAGCGTGaa < 2:81061/149‑1 (MQ=255) cGACGCGTGGTACTTTGCCAACCTCCTGTGCCAGAAGAACGCTAAGGGCTTATACGCCTACGAAACCGACAAGCGCGGCAAGCCAAAGAAGGTCTTCGATGCCACCGTGCTCGACGTTCTCAAACCGATCGTGTTCGAGCAGCGTGaa < 4:24349/148‑1 (MQ=255) cgTTGTACGAGGCCAACCGCCTGGGCCAGAAGAACGGTAAGGGCTTCTACGCCTACGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAACCGATCGTGTTCGAGCAGCGTGAAGTCACt < 6:227023/149‑1 (MQ=255) aCGAGGCCAACCGCCTGGGCCAGAAGAACGGTAAGGGCTTCTACGCCTACGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAAc > 2:61637/1‑114 (MQ=255) aCGAGGCCAACCGCCTGGGCCAGAAGAACGGTAAGGGCTTCTACGCCTACGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAAc < 1:61637/114‑1 (MQ=255) ggCCAACCGCCTGGGCCAGAAGAACGGTAAGGGCTTCTACGCCTAGGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAACCGATCGTGTTCGAGCAGCGTGAAGTCACTGACGAAGAca > 1:216607/1‑149 (MQ=255) cAACCGCCTGGGCCAGAAGAACGGTAAGGGCTTCTACGCCTACGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACGGTGCTCGACGTGc < 4:115747/101‑1 (MQ=255) cAACCGCCTGGGCCAGAAGAACGGTAAGGGCTTCTACGCCTACGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGc > 3:115747/1‑101 (MQ=255) aaCCGCCTGGGCCAGAAGAACGGTAAGGGCTTCTACGCCTACGAAAGCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAACCGATCGTGTTCGAGCAGCGTGAAGTCACTGACGAAGAcatcat < 4:269564/149‑1 (MQ=255) aaCCGCCTGGGCCAGAAGAACGGTAAGGGCTTCTACGCCTACGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAACCGATCGTGTTCGAGCAGCGTGAAGTCACTGACGAAGAcatcat > 3:131533/1‑149 (MQ=255) gCCTGGGCCAGAAGAACGGTAAGGGCTTCTACGCCTACGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAACCGATCGTGTTCGAGCAGCGTGAAGTCACTGACGAAGACATCATCAAc < 1:20558/149‑1 (MQ=255) gggCCAGAAGAACGGTAAGGGCTTCTACGCCTACGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAACCGATCGTGTTCGAGCAGCGTGAAGTCACTGACGAAGACATCATCAACTGga > 6:169960/1‑149 (MQ=255) agtaCGGTAAGGGCTTCTACGCCTTCGAAACCGACAAGCGCGGCAAGCCGATGAAGGTCTTCGATGCCAGCGTGCTCGACGTGCTCAAACCGATCGTGTTCGAGCAGCGTGTAGTCACTGACGAAGACATCATCCAGTTGatgatgtct < 8:242669/146‑4 (MQ=255) agaaCGGTAAGGGCTTCTACGCCTACGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGATGTGCTCAAACCGATCGTGTTCGAGCAGCGTGAAGTCACTGACGAAGACATCATCAACTGGATGATGGTc < 2:39635/149‑1 (MQ=255) aaCGGTAAGGGCTTCTACGCCTACGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAACCGATCGTGTTCGAGCAGCGTGAAGTCACTGACGAAGACATCATCCAGTTGatgatgtcttc < 7:182716/149‑6 (MQ=255) aaCGGTAAGGGCTTCTACGCCTACGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAACCGATCGTGTTCGAGCAGCGTGAAGTCACTGACGAAGACATCATCAACTGGATGATGGTccc > 8:184972/1‑149 (MQ=255) cGGTAAGGGCTTCTACGCCTACGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAACCGATCGTGTTCGAGCAGCGTGAAGTCACTGACGAAGACATCATCAACTGGATGATGGTCCCGc > 3:146042/1‑149 (MQ=255) tAAGGGCTTCTACGCCTACGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAACCGATCGTGTTCGATCAGCGTTAAGTCACTGACGAAGACATCATCAACTGGATTATGGTCCCGCtgt < 1:221841/149‑1 (MQ=255) aacggCTGCTACGCCTACGACACCGACACGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAACCGATCGTGTTCGAGCAGCGTGAAGTCACTGACGAAGACATCATCAACTGGATGATGGTCCCGCtgtg < 8:124983/146‑1 (MQ=255) gCTTCTACGCCTACGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAACCGATCGTGTTCGAGCAGCGTGAAGTCACTGACGAAGACATCATCAACTGGATGATGGTCCCGCTGTGCCtt > 6:243203/1‑149 (MQ=255) cGCCTACGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAACCGATCGTGTTCGAGCAGCGTGAAGTCACTGACGAAGACATCATCAACTGGATGATGGTCCCGCTGTGCCTTGAGAcc < 1:123071/148‑1 (MQ=255) ccTACGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAACCGATCGTGTTCGAGCAGCGTGAAGTCACTGACGAAGACatcatc > 5:150419/1‑113 (MQ=255) ccTACGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAACCGATCGTGTTCGAGCAGCGTGAAGTCACTGACGAAGACatcatc < 6:150419/113‑1 (MQ=255) cTACGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAACCGATCGTGTTCGAGCAGCGTGAAGTCACTGACGAAGACATCATCAACTGGATGATGGTCCCGCTGTGCCTTgag > 7:8289/1‑142 (MQ=255) cTACGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAACCGATCGTGTTCGAGCAGCGTGAAGTCACTGACGAAGACATCATCAACTGGATGATGGTCCCGCTGTGCCTTgag < 8:8289/142‑1 (MQ=255) aCGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAACCGATCGTGTTCGAGCAGCGTGAAGTCACTGACGAAGACATCATCAACTGGATGATGGTCCCGCTGTGCCTTGAGACCGTGCGt > 4:5416/1‑149 (MQ=255) cGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAACCGATCGTGTTCGAGCAGCGTGAAGTCACTGACGAAGACATCATCAACTGGATGATGGTCCCGCTGTGCCTTGAGACCGTGCGtt < 5:169960/149‑1 (MQ=255) aaCCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAACCGATCGTGTTCGAGCAGCGTGAAGTCACTGACGAAGACATCATCAACTGGATGATGGTCCCGCTGTGCCTTGAGACCGTGCGTTGcc < 5:243203/149‑1 (MQ=255) aaCCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAACCGATCGTGTTCGAGCAGCGTGAAGTCACTGACGAAGACATCATCAACTGGATGATGGTCCCGCTGTGCCTTGAGACCGTGCGTTGcc > 5:242491/1‑149 (MQ=255) aCCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAACCGATCGTGTTCGAGCAGCGTGAAGTCACTGACGAAGACATCATCAACTGGATGATGGTCCCGCTGTGCCTTGAGACCGTGCGTTGCCt < 4:131533/149‑1 (MQ=255) aCCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAACCGATCGTGTTCGAGCAGCGTGAAGTCACTGACGAAGACATCATCAACTGGATGATGGTCCCGCTGTGCCTTGAGACCGTGCGTTGCCt < 3:5416/149‑1 (MQ=255) cGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCAGCGTGCTCTACGTGCTCAAACCGATCGTGTTCGAGCAGCGTGTAGTCACTTACGAAGACATCATCAACTGGATGATGGTCCCGCt < 2:260040/123‑1 (MQ=255) aCAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAACCGATCGTGTTCGAGCAGCGTGAAGTCACTGACGAAGACATCATCAACTGGATGATGGTCCCGCTGTGCCTTGAGACCGTGCGTTGCCTGGaa < 6:242491/149‑1 (MQ=255) aaGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAACCGATCGTGTTCGAGCAGCGTGAAGTCACTGACGAAGACATCATCAACTGGATGATGGTCCCGCTGTGCCTTGAGACCGTGCGTTGCCTGGAAGa < 3:77962/149‑1 (MQ=255) gcgcGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAACCGATCGTGTTCGAGCAGCGTGAAGTCACTGACGAAGACATCATCAACTGGATGATGGTCCCGCTGTGCCTTGAGACCGTGCGTTGCCTGGAAGACg > 8:224547/1‑149 (MQ=255) gcgcGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAACCGATCGTGTTCGAGCAGCGTGAAGTCACTGACGAAGACATCATCAACTGGATGATGGTCCCGCTGTGCCTAGAGACCGTGCGTTGCCTGGAAGACg > 4:27586/1‑149 (MQ=255) cGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAACCGATCGTGTTCGAGCAGCGTGAAGTCACTGACGAAGACATCATCAACTGGATGATGGTCCCGCTGTGCCTTGAGACCGTGCGTTGCCTGGAAGACGGCATCGTCGa > 4:60420/1‑148 (MQ=255) | GTGACGTCATGGCCGAAGGCTTCCCGGATCGCATGAAGGACGAGCGCCGCTCGGCAGTCGACGCGTTGTACGAGGCCAACCGCCTGGGCCAGAAGAACGGTAAGGGCTTCTACGCCTACGAAACCGACAAGCGCGGCAAGCCGAAGAAGGTCTTCGATGCCACCGTGCTCGACGTGCTCAAACCGATCGTGTTCGAGCAGCGTGAAGTCACTGACGAAGACATCATCAACTGGATGATGGTCCCGCTGTGCCTTGAGACCGTGCGTTGCCTGGAAGACGGCATCGTCGA > NC_002947/2438738‑2439026 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |