Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 2,488,047 A→C 10.2% Q140P (CAA→CCA) ‡ PP_2182 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,488,0470AC10.2% 161.8 / 8.4 57Q140P (CAA→CCA) ‡PP_2182hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (29/22);  new base C (3/3);  total (32/25)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GCTGGGCATTTCCACGTGGTGCCGGGGCGCTCGATACTGGGCGAGCATGGTGGAGAATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATT  >  NC_002947/2487904‑2488190
                                                                                                                                                |                                                                                                                                               
gCTGGGCATTTCCACGTGGTGCCGGGGCGCTCGATACTGGGCGAGCATGGTGGAGAATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCa                                                                                                                                            >  7:85199/1‑149 (MQ=255)
   gggCATTTCCACGTGGTGCCGGGGCGCTCGATACTGGGCGAGCATGGTGGAGAATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGcc                                                                                                                                         <  1:263820/149‑1 (MQ=255)
     gCATTTCCACGTGGTGCCGGGGCGCTCGATACTGGGCGAGCATGGTGGAGAATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAg                                                                                                                                       <  7:232934/149‑1 (MQ=255)
       aTTTCCACGTGGTGCCGGGGCGCTCGATACTGGGCGAGCATGGTGGAGAATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGTTGCCGCGCAGcctgct                                                                                                                                     <  3:88045/149‑5 (MQ=255)
       aTTTCCACGTGGTGCCGGGGCGCTCGATACTGGGCGAGCATGGTGGAGAATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGcc                                                                                                                                         <  1:282403/145‑1 (MQ=255)
       aTTTCCACGTGGTGCCGGGGCGCTCGATACTGGGCGAGCATGGTGGAGAATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGcc                                                                                                                                         >  2:282403/1‑145 (MQ=255)
        tttCCACGTGGTGCCGGGGCGCTCGATACTGGGCGAGCATGGTGGAGAATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCTGGCTGCGTTGCCGCGCAGcctgctg                                                                                                                                    <  7:253723/149‑6 (MQ=255)
           ccACGTGGTGCCGGGGCGCTCGATACTGGGCGAGCATGGTGGAGAATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGa                                                                                                                                 >  3:55694/1‑149 (MQ=255)
             aCGTGGTGCCGGGGCGCTCGATACTGGGCGAGCATGGTGGAGAATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACg                                                                                                                               <  8:85199/149‑1 (MQ=255)
                             cTCGATACTGGGCGAGCATGGTGGAGAATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTc                                                                                                                >  8:30150/1‑148 (MQ=255)
                             cTCGATACTGGGCGAGCATGGTGGAGAATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTc                                                                                                                >  4:218161/1‑148 (MQ=255)
                                    cTGGGCGAGCATGGTGGAGAATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAaggccc                                                                                                        <  6:118013/149‑1 (MQ=255)
                                        gCGAGCATGGTGGAGAATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGt                                                                                                                 <  6:45891/136‑1 (MQ=255)
                                        gCGAGCATGGTGGAGAATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGt                                                                                                                 >  5:45891/1‑136 (MQ=255)
                                         cGAGCATGGTGGAGAATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAaggcccaggcc                                                                                                   >  2:127306/1‑149 (MQ=255)
                                         cGAGCATGGTGGAGAATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCAAAGTCAAaggccc                                                                                                        >  2:57243/1‑144 (MQ=255)
                                         cGAGCATGGTGGAGAATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCAAAGTCAAaggccc                                                                                                        <  1:57243/144‑1 (MQ=255)
                                                  tggAGAATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCg                                                                                          >  3:301325/1‑149 (MQ=255)
                                                  tggAGAATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCg                                                                                          >  8:31008/1‑149 (MQ=255)
                                                    gagaATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGc                                                                                        >  6:273051/1‑149 (MQ=255)
                                                         tGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGccccc                                                                                    >  1:234833/1‑149 (MQ=255)
                                                            aCCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCccgccg                                                                                >  1:245740/1‑149 (MQ=255)
                                                              cgcgCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCccgccgcc                                                                              <  7:30150/149‑1 (MQ=255)
                                                                        ccTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCaa                                                                    >  3:272057/1‑149 (MQ=255)
                                                                            aaTGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGt                                                                <  2:245740/149‑1 (MQ=255)
                                                                                      ccGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCACAGGCCCAGGCCCCGGCTCCGCCACCCGCCGACGCCCCCGCCACGGTGCAGTCAAc                                                       >  5:44731/1‑148 (MQ=255)
                                                                                      ccGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTAc                                                       <  6:40141/148‑1 (MQ=255)
                                                                                      ccGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGACTAc                                                       >  5:40141/1‑148 (MQ=255)
                                                                                      ccGCAGGTACTGTGACCGACGCTCAGGCGCTTCATGCAAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTAc                                                       <  6:44731/148‑1 (MQ=255)
                                                                                         cAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGAc                                                   <  4:55694/149‑1 (MQ=255)
                                                                                          aGGTACTGTGACCGCCGCTCAGGCGCTGCCTGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACt                                                  <  5:273051/149‑1 (MQ=255)
                                                                                          aGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACt                                                  <  7:31008/149‑1 (MQ=255)
                                                                                           ggTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTg                                                 <  4:272057/149‑1 (MQ=255)
                                                                                               cTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGc                                              >  7:162687/1‑148 (MQ=255)
                                                                                                tgtgACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCt                                             >  4:31387/1‑148 (MQ=255)
                                                                                                tgtgACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTc                                            <  3:218161/149‑1 (MQ=255)
                                                                                                  tgACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAg                                          <  1:127306/149‑1 (MQ=255)
                                                                                                    aCCGCCGCTCCGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCCCCGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCGCCGGCCCCCGCCGCCGACCCCGCCACGGGGCCGGCTCCCGACGGCGCTCAggc                                        >  8:116140/1‑147 (MQ=255)
                                                                                                    aCCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTc                                        >  7:80766/1‑149 (MQ=255)
                                                                                                      cgccgcTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTcgc                                      >  6:218838/1‑149 (MQ=255)
                                                                                                      cgccgcTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTcgc                                      >  8:191833/1‑149 (MQ=255)
                                                                                                         cgcTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGtt                                   <  4:301325/149‑1 (MQ=255)
                                                                                                           cTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCt                                 <  5:218838/149‑1 (MQ=255)
                                                                                                                        aTGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTTAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACg                                                                  >  5:86379/1‑104 (MQ=255)
                                                                                                                        aTGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTTAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACg                                                                  <  6:86379/104‑1 (MQ=255)
                                                                                                                            cAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTcggta                                    <  7:130259/130‑4 (MQ=255)
                                                                                                                            cAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTcggta                                    >  8:130259/1‑127 (MQ=255)
                                                                                                                                 agcagGCTGCGCGTCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGAt             <  3:31387/148‑1 (MQ=255)
                                                                                                                                  gcagGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATgg           >  4:36595/1‑149 (MQ=255)
                                                                                                                                   ctggCTGCGTTGCCGCGCAGCCTGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGAt             <  3:20942/144‑1 (MQ=255)
                                                                                                                                   ctggCTGCGTTGCCGCGCAGCCTGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGAt             >  4:20942/3‑146 (MQ=255)
                                                                                                                                   cagGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATgg           >  3:42085/1‑148 (MQ=255)
                                                                                                                                   cagGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACGGAGCGCAGTCGCGGTATGCCCCGTAGCCATGCTGGATgg           >  8:195284/1‑148 (MQ=255)
                                                                                                                                    tggCTGCGTTGCCGCGCAGCCAGGACCGACGCAATTGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATgg           >  6:19210/2‑147 (MQ=255)
                                                                                                                                      gCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGc       >  6:132181/1‑149 (MQ=255)
                                                                                                                                      gCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGc       >  5:130664/1‑149 (MQ=255)
                                                                                                                                           gcgGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCTAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCAtt  >  3:206089/1‑149 (MQ=255)
                                                                                                                                                |                                                                                                                                               
GCTGGGCATTTCCACGTGGTGCCGGGGCGCTCGATACTGGGCGAGCATGGTGGAGAATGCACCGCGCCTTGACCTGAATGGGCAGGCCGCAGGTACTGTGACCGCCGCTCAGGCGCTGCATGCCAAGCAGCAGGCTGCGCGGCAACGCAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATT  >  NC_002947/2487904‑2488190

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: