Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,633,457 | T→G | 6.9% | intergenic (+100/‑82) | hupB → / → PP_2304 | DNA binding regulator subunit beta B/peptidyl‑prolyl cis‑trans isomerase D |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,633,457 | 0 | T | G | 6.9% | 181.8 / 4.6 | 58 | intergenic (+100/‑82) | hupB/PP_2304 | DNA binding regulator subunit beta B/peptidyl‑prolyl cis‑trans isomerase D |
Reads supporting (aligned to +/- strand): ref base T (27/27); new base G (2/2); total (29/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.63e-01 |
TTCCAGGTTTCAAGGCCGGCAAAGGCCTGAAAGACGCCGTCAACTAAGTCGTCTTTCAGCCGGACCCGGCCTGGCCTGGTCCGAGCACGGTGATGGCGGGGCGCAAACGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATCAGGATTCTACCCACGCTCCGCGGTTGTCGACGCAGTGGTACAGCCGTTTCTGGGGGACGCATGCTGCAAAATATCAGGGACAATTCACAAGGTTGGATTGCCAAGACCATCATCGGCCTTATCGTC > NC_002947/2633311‑2633604 | ttCCAGGTTTCAAGGCCGGCAAAGGCCTGAAAGACGCCGTCAACTAAGTCGTCTTTCAGCCGGACCCGGCCTGGCCTGGTCCGAGCACGGTGATGGCGGGGCGCAAACGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCg < 5:219800/149‑1 (MQ=255) tCCAGGTTTCAAGGCCGGCAAAGGCCTGAAAGACGCCGTCAACTAAGTCGTCTTTCAGCCGGACCCGGCCTGGCCTGGTCCGAGCACGGTGATGGCGGGGCGCAAACGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCg > 8:287236/1‑148 (MQ=255) ccAGGTTTCAAGGCCGGCAAAGGCCTGAAAGACGCCGTCAACTAAGTCGTCTTTCAGCCGGACCCGGCCTGGCCTGGTCCGAGCACGGTGATGGCGGGGCGCAAACGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCgg < 2:66293/148‑1 (MQ=255) cAGGTTTCAAGGCCGGCAAAGGCCTGAAAGACGCCGTCAACTAAGTCGTCTTTCAGCCGGACCCGGCCTGGCCTGGTCCGAGCACGGTGATGGCGGGGCGCAAACGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCGGa < 7:287236/148‑1 (MQ=255) ggTTTCAAGGCCGGCAAAGGCCTGAAAGACGCCGTCAACTAAGTCGTCTTTCAGCCGGACCCGGCCTGGCCTGGTCCGAGCACGGTGATGGCGGGGCGCAAACGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCGGATgc < 8:61567/149‑1 (MQ=255) tttCAAGGCCGGCAAAGGCCTGAAAGACGCCGTCAACTAAGTCGTCTTTCAGCCGGACCCGGCCTGGCCTGGTCCGAGCACGGTGATGGCGGGGCGCAAACGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCGGATgcgc < 8:77362/149‑1 (MQ=255) aaGGCCGGCAAAGGCCTGAAAGACGCCGTCAACTAAGTCGTCTTTCAGCCGGACCCGGCCTGGCCTGGTCCGAGCACGGTGATGGCGGGGCGCAAACGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCGGATGCGCcttt < 3:59135/149‑1 (MQ=255) aGGCCGGCAAAGGCCTGAAAGACGCCGTCAACTAAGTCGTCTTTCAGCCGGACCCGGCCTGGCCTGGTCCGAGCACGGTGATGGCGGGGCGCAAACGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCGAGGATGCGCctttt < 3:104335/149‑2 (MQ=255) ggCCGGCAAAGGCCTGAAAGACGCCGTCAACTAAGTCGTCTTTCAGCCGGACCCGGCCTGGCCTGGTCCGAGCACGGTGATGGCGGGGCGCAAACGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCGGATGCGCctttct < 6:197468/149‑1 (MQ=255) gCCGGCAAAGGCCTGAAAGACGCCGTCAACTAAGTCGTCTTTCAGCCGGACCCGGCCTGGCCTGGTCCGAGCACGGTGATGGCGGGGCGCAAACGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCGGATGCGCctttctt > 7:207596/1‑149 (MQ=255) gCAAAGGCCTGAAAGACGCCGTCAACTAAGTCGTCTTTCAGCCGGACCCGGCCTGGCCTGGTCCGAGCACGGTGATGGCGGGGCGCAAACGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCGAGGATGCGCcttttcttagc < 5:218346/149‑8 (MQ=255) cAAAGGCCTGAAAGACGCCGTCAACTAAGTCGTCTTTCAGCCGGACCCGGCCTGGCCTGGTCCGAGCACGGTGATGGCGGGGCGCAAACGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATc < 3:17077/149‑1 (MQ=255) aaaGGCCTGAAAGACGCCGTCAACTAAGTCGTCTTTCAGCCGGACCCGGCCTGGCCTGGTCCGAGCACGGTGATGGCGGGGCGCAAACGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATCa < 6:202181/149‑1 (MQ=255) ggCCTGAAAGACGCCGTCAACTAAGTCGTCTTTCAGCCGGACCCGGCCTGGCCTGGTCCGAGCACGGTGATGGCGGGGCGCAAACGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATCAGGa > 1:255128/1‑149 (MQ=255) cTGAAAGACGCCGTCAACTAAGTCGTCTTTCAGCCGGACCCGGCCTGGCCTGGTCCGAGCACGGTGATGGCGGGGCGCAAACGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATCAGGATTc > 5:221337/1‑149 (MQ=255) gACGCCGTCAACTAAGTCGTCTTTCAGCCGGACCCGGCCTGGCCTGGTCCGAGCACGGTGATGGCGGGGCGCAAACGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATCAGGATTCTACCCa < 2:255128/149‑1 (MQ=255) aGTCGTCTTTCAGCCGGACCCGGCCTGGCCTGGTCCGAGCACGGTGATGGCGGGGCGCAAACGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATCAGGATTCTACCCACGCTCCGCGGTTGt < 8:207596/149‑1 (MQ=255) gtcTTTCAGCCGGACCCGGCCTGGCCTGGTCCGAGCACGGTGATGGCGGGGCGCAAACGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATCAGGATTCTACCCACGCTCCGCGGTTGTCGa < 4:77679/148‑1 (MQ=255) tttCAGCCGGACCCGGCCTGGCCTGGTCCGAGCACGGTGATGGCGGGGCGCAAACGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCGGATgcgc < 8:32319/103‑1 (MQ=255) tttCAGCCGGACCCGGCCTGGCCTGGTCCGAGCACGGTGATGGCGGGGCGCAAACGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCGGATgcgc > 7:32319/1‑103 (MQ=255) aCCCGGCCTGGCCTGGTCCGAGCACGGTGATGGCGGGGCGCAAACGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATCAGGATTCTACCCACGCTCCGCGGTTGTCGACGCAGTGGTACAGc > 4:91085/1‑149 (MQ=255) gcctggTCCGAGCACGGTGATGGCGGGGCGCAAACGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATCAGGATTCTa > 1:262105/1‑104 (MQ=255) gcctggTCCGAGCACGGTGATGGCGGGGCGCAAACGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATCAGGATTCTa < 2:262105/104‑1 (MQ=255) gcctggTCCGAGCACGGTGATGGCGGGGCGCAAACGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATCAGGATTCTACCCACGCTCCGCGGTTGTCGACGCAGTGGTACAGCCGTTTCTggg < 7:31411/149‑1 (MQ=255) gAGCACGGTGATGGCGGGGCGCAAACGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATCAGGATTCTACCCACGCTCCGCGGTTGTCGACGCAg < 8:85821/121‑1 (MQ=255) gAGCACGGTGATGGCGGGGCGCAAACGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATCAGGATTCTACCCACGCTCCGCGGTTGTCGACGCAg > 7:85821/1‑121 (MQ=255) cGGTGATGGCGGGGCGCAAACGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATCAGGATTCTACCCACGCTCCGCGGTTGTCGACGCAGTGGTTCAGCCGTTTCTGGGGGACGCAtgctgc > 7:292653/1‑148 (MQ=255) cGGTGATGGCGGGGCGCAAACGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATCAGGATTCTACCCACGCTCCGCGGTTGTCGACGCAGTGGTACAGCCGTTTCTGGGGGACGCAtgct < 4:179536/146‑1 (MQ=255) cGGTGATGGCGGGGCGCAAACGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATCAGGATTCTACCCACGCTCCGCGGTTGTCGACGCAGTGGTACAGCCGTTTCTGGGGGACGCAtgct > 3:179536/1‑146 (MQ=255) ggTGATGGCGGGGCGCAAACGTTCCCTCCTGACTCGTTTGCTAAGAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATCAGGATTCTACCCACGCTCCGCGGTTGTCGACGCAGTGGTACAGCCGTTTCTGGGGGACGCAtgctg < 3:91085/146‑1 (MQ=255) ggTGATGGCGGGGCGCAAACGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATCAGGATTCTACCCa < 6:172391/93‑1 (MQ=255) ggTGATGGCGGGGCGCAAACGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATCAGGATTCTACCCa > 5:172391/1‑93 (MQ=255) tGATGGCGGGGCGCAAACGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATCAGGATTCTACCCACGCTCCGCGGTTGTCGACGCAGTGGTACAGCCGTTTCTGGGGGACGCATGCTGCaaaa > 2:199248/1‑149 (MQ=255) gATGGCGGGGCGCAAACGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATCAGGATTCTACCCACGCTCCGCGGTTGTCGACGCAGTGGTACAGCCGTTTCTGGGGGACGCATGCTGCaaaa > 3:251625/1‑148 (MQ=255) gCGGGGCGCAAACGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATCAGGATTCTACCCACGCTCCGCGGTTGTCGACGCAGTGGTACAGCCGTTTCTGGGGGACGCATGCTGCAAAATATCa < 6:221337/149‑1 (MQ=255) cgcAAACGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATCAGGATTCTACCCACGCTCCGCGGTTGTCTACGCAGTGGTACAGCAGTTTCTGGGGGACGCATGCTGCAAAATATCAGGGAc > 8:293449/1‑148 (MQ=255) aaaCGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATCAGGATTCTACCCACGCTCCGCGGTTGTCGACGCAGTGGTACAGCCGTTTCTGGGGGACGCATGCTGCAAAATATCAGGGACAAt > 4:116214/1‑148 (MQ=255) aaCGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATCAGGATTCTACCCACGCTCCGCGGTTGTCGCCGCAGTGGTACAGCCGTTTCTGGGGGCCGCATGCTGCAAAATAGAAGGGACAAtt > 4:229084/1‑148 (MQ=255) cGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATCAGGATTCTACCCACGCTCCGCGGTTGTCGACGCAGTGGTACAGCCGTTTCTGGGGGACACATGCTGCAAAATATCAGGGACAATTca < 7:45215/148‑1 (MQ=255) cGCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATCAGGATTCTACCCACGCTCCGCGGTTGTCGACGCAGTGGTACAGCCGTTTCTGGGGGACGCATGCTGCAAAATATCAGGGACAATTCACAAGGtt < 1:199248/149‑1 (MQ=255) gCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATCAGGATTCTACCCACGCTCCGCGGTTGTCGACGCAGTGGTACAGCCGTTTCTGGGGGACGCATGCTGCAAAATATCAGGGACAATTCACAAGGTTg > 2:168772/1‑149 (MQ=255) acacGTTTGCTAAGAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATCAGGATTCTACCCACGCTCCGCGGTTGTCGACGCAGTGGTACAGCCGTTTCTGGGGGACGCATGCTGCAAAATATCAGGGACAATTCACAAGGTTGGATTg > 1:150031/1‑149 (MQ=255) acacGTTTGCTAAGAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATCAGGATTCTACCCACGCTCCGCGGCTGTCGACGCAGTGGTACAGCCGTTTCTGGGGGACGCATGCTGCAAAATATCAGGGACAATTCACAAGGTTGGAtt < 3:238461/148‑1 (MQ=255) acGTTTGCTAAGAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATCAGGATTCTACCCACGCTCCGCGGTTGTCGACGCAGTGGTACAGCCGTTTCTGGGGGACGCATGCTGCAAAATATCAGGGACAATTCACAAGGTTGGATTGcc < 3:256376/149‑1 (MQ=255) tGCTAAGAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATCAGGATTCTACCCACGCTCCGCGGTTGTCGACGCAGTGGTACAGCCGTTTCTGGGGGACGCATGCTGCAAAATATCAGGGACAATTCACAAGGTTGGATTGCCAAGa < 3:116214/148‑1 (MQ=255) gCTAAGAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATCAGGATTCTACCCACGCTCCGCGGTTGTCGACGCAGTGGTACAGCCGTTTCTGGGGGACGCATGCTGCAAAATATCAGGGACAATTCACAAGGTTGGATTGCCAAGAc < 3:229084/148‑1 (MQ=255) cTAAGAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATCAGGATTCTACCCACGCTCCGCGGTTGTCGACGCAGTGGTACAGCCGTTTCTGGGGGACGCATGCTGCAAAATATCAGGGACAATTCACAAGGTTGGATTGCCAAGACca > 8:279154/1‑149 (MQ=255) tAAGAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATCAGGATTCTACCCACGCTCCGCGGTTGTCGACGCAGTGGTACAGCCGTTTCTGGGGGACGCATGCTGCAAAATATCAGGGACAATTCACAAGGTTGGTTTGCCAAGACcat > 2:210375/1‑149 (MQ=255) aGAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATCAGGATTCTACCCACGCTCCGCGGTTGTCGACGCAGTGGTACAGCCGTTTCTGGGGGACGCATGCTGCAAAATATCAGGGACAATTCACAAGGTTGGATTGcc > 8:144860/1‑139 (MQ=255) aGAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATCAGGATTCTACCCACGCTCCGCGGTTGTCGACGCAGTGGTACAGCCGTTTCTGGGGGACGCATGCTGCAAAATATCAGGGACAATTCACAAGGTTGGATTGcc < 7:144860/139‑1 (MQ=255) gAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATCAGGATTCTACCCACGCTCCGCGGTTGTCGACGCAGTGATACAGCCGTTTCTGGGGGACGCATGCTGCAAAATATCAGGGACAATTCACAAGGTTGGATTGCCAAGACcatcat > 2:167870/1‑149 (MQ=255) aGGCGCATCCTCGGATGCGCCTTTCTTTTATCAGGATTCTACCCACGCTCCGCGGTTGTCGACGCAGTGGTACAGCCGTTTCTGGGGGACGCATGCTGCAAAATATCAGGGACAATTCACAAGGTTGGATTGCCAAGACCATCATCGGc > 2:150093/1‑149 (MQ=255) gcgcATCCTCGGATGCGCCTTTCTTTTATCAGGATTCTACCCACGCTCCGCGGTTGTCGACGCAGTGGTACAGCCGTTTCTGGGGGACGCATGCTGCAAAATATCAGGGACAATTCACAAGGTTGGATTGCCAAGACCATCATCGGCCt > 7:186488/1‑149 (MQ=255) gcgcATCCGAGGATGCGCCTTTCTTTTATCAGGATTCTACCCACGCTCCGCGGTTGTCGACGCAGTGGTACAGCCGTTTCTgggg > 8:67685/1‑85 (MQ=255) gcgcATCCGAGGATGCGCCTTTCTTTTATCAGGATTCTACCCACGCTCCGCGGTTGTCGACGCAGTGGTACAGCCGTTTCTGGGGGACGCATGCTGCAAAATATCAGGGACAATTCACAAGGTTGGATTGCCAAGACCATCATCGGCCt > 7:240347/1‑149 (MQ=255) gcATCCTCGGATGCGCCTTTCTTTTATCAGGATTCTACCCACGCTCCGCGGTTGTCGACGCAGTGGTACAGCCGTTTGTGGGGGACGCATGCTGCAAACAATCAGGGACAATTCACAAGGTTGGATTGCCAAGACCATAATCGGCATTa > 1:99517/1‑149 (MQ=255) tCCTCGGATGCGCCTTTCTTTTATCAGGATTCTACCCACTCTCCGCGGTTGTCGACGCAGTGGTACAGCCGTTTCT‑GGGGACGCATTCTGCAAAATATCAgg > 7:266181/1‑102 (MQ=255) cTCGGATGCGCCTTTCTTTTATCAGGATTCTACCCACGCTCCGCGGTTGTCGACGCAGTGGTACAGCCGTTTCTGGGGGACGCATGCTGCAAAATATCAGGGACAATTCACAAGGTTGGATTGCCAAGACCATCATCGGCCTTAtagtc > 8:291183/1‑149 (MQ=255) | TTCCAGGTTTCAAGGCCGGCAAAGGCCTGAAAGACGCCGTCAACTAAGTCGTCTTTCAGCCGGACCCGGCCTGGCCTGGTCCGAGCACGGTGATGGCGGGGCGCAAACGTTCCCGCCTGACACGTTTGCTAAGAAAAGGCGCATCCTCGGATGCGCCTTTCTTTTATCAGGATTCTACCCACGCTCCGCGGTTGTCGACGCAGTGGTACAGCCGTTTCTGGGGGACGCATGCTGCAAAATATCAGGGACAATTCACAAGGTTGGATTGCCAAGACCATCATCGGCCTTATCGTC > NC_002947/2633311‑2633604 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |