Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,651,276 | G→C | 9.1% | intergenic (+41/+29) | PP_2323 → / ← aroF‑I | hypothetical protein/tyr‑sensitive phospho‑2‑dehydro‑3‑deoxyheptonate aldolase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,651,276 | 0 | G | C | 9.1% | 129.5 / 4.5 | 44 | intergenic (+41/+29) | PP_2323/aroF‑I | hypothetical protein/tyr‑sensitive phospho‑2‑dehydro‑3‑deoxyheptonate aldolase |
Reads supporting (aligned to +/- strand): ref base G (20/20); new base C (2/2); total (22/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.49e-01 |
GCTCTGGAGTACGCCGAGCAGATGGGGTACACGGTGATCCCGTCTTGCTCATATGTGGAGCGTTACATGGAGCGCCAGCAGCGGCATTCGAGCAAGGCCTGAGCTGACGACAGGCACCAGACACAACAAAAAACGCCGGGCAGTGCCCGGCGTTTTTCATTCCCGCAATGTTCAGCCGCGCTTACGCTGCGGCAGCACATCCTTGAGCTTGGCATGCATGCTGCGCAGGGTTTTCTCGGTAGCCGACCAGTCGATGCAGGCGTCCGTGATCGACACGCCATACTGC > NC_002947/2651134‑2651419 | gCTCTGGAGTACGCCGAGCAGATGGGGTACACGGTGATCCCGTCTTGCTCATATGTGGAGCGTTACATGGAACGCCAGCAGCGGCATTCGAGCAAGGCCTGAGCTGACGACAGGCACCAGACACAACAAAAAACGCCGGGCAGTGCCCg > 8:261679/1‑149 (MQ=255) gAGTACGCCGAGCAGATGGGGTACACGGTGATCCCGTCTTGCTCATATGTGGAGCGTTACATGGAGCGCCAGCAGCGGCATTCGAGCAAGGCCTGAGCTGACGACAGGCACCAGACACAACAAAACACGCCGGGCAGTGCCCGGCGttt < 2:159819/149‑1 (MQ=255) gAGTACGCCGAGCAGATGGGGTACACGGTGATCCCGTCTTGCTCATATGTGGAGCGTTACATGGAGCGCCAGCAGCGGCATTCGAGCAAGGCCTGAGCTGACGACAGGCACCAGACACAACAAAAAACGCCGGGCAGTGCCCGGCGttt < 8:17296/149‑1 (MQ=255) tACGCCGAGCAGATGGGGTACACGGTGATCCGGTCTTGCTCATATGTGTAGCGTTACATGGAGCGCCAGCAGCGGCATTCGAGCAAGGCCTGAGCTGACGACAGGCACCAGACACAACAAAAAACGCCGGGCAGTGCCCGGCGttttt < 6:195310/148‑1 (MQ=255) cGAGCAGATGGGGTACACGGTGATCCCGTCTTGCTCATATGTGGAGCGTTACATGGAGCGCCAGCAGCGGCATTCGAGCAAGGCCTGAGCTGACGACAGGCACCAGACACAACAAAAAACGCCGGGCAGTGCCCGGCGTTTTTCATTcc > 6:75956/1‑149 (MQ=255) aTGGGGTACACGGTGATCCCGTCTTGCTCATATGTGGAGCGTTACATGGAGCGCCAGCAGCGGCATTCGAGCAAGGCCTGAGCTGACGACAGGCACCAGACACAACAAAAAACGCCGGGCACTGCCCGGCGttt > 5:129574/1‑134 (MQ=255) aTGGGGTACACGGTGATCCCGTCTTGCTCATATGTGGAGCGTTACATGGAGCGCCAGCAGCGGCATTCGAGCAAGGCCTGAGCTGACGACAGGCACCAGACACAACAAAAAACGCCGGGCACTGCCCGGCGttt < 6:129574/134‑1 (MQ=255) cGTCTTGCTCATATGTGGAGCGTTACATGGAGCGCCAGCAGCGGCATTCGAGCAAGGCCTGAGCTGACGACAGGCACCAGACACAACAAAAAACGCCGGGCAGTGCCCGGCGTTTTTCATTCCCg > 1:291393/1‑125 (MQ=255) cGTCTTGCTCATATGTGGAGCGTTACATGGAGCGCCAGCAGCGGCATTCGAGCAAGGCCTGAGCTGACGACAGGCACCAGACACAACAAAAAACGCCGGGCAGTGCCCGGCGTTTTTCATTCCCg < 2:291393/125‑1 (MQ=255) tCTTGCTCATATGTGGAGCGTTACATGGAGCGCCAGCAGCGGCATTCGAGCAAGGCCTGAGCTGACGACAGGCACCAGACACAACAAAAAACGCCGGGCAGTGCCCGGCGTTTTTCATTCCCGCAATGTTCAGCCGCGCTTACGCTGCg < 6:291128/149‑1 (MQ=255) gCTCATATGTGGAGCGTTACATGGAACGCCAGCAGCGGCATTCGAGCAAGGCCTGAGCTGACGACAGGCACCAGACACAACAAAAAACGCCGGGCAGTGCCCGGCGTTTTTCATTCCCGCAATGTTCAGCCGCGCTTACGCTGCGgca < 7:261679/148‑1 (MQ=255) atatGTGGAGCGTTACATGGAGCGCCAGCAGCGGCATTCGAGCAAGGCCTGAGCTGACGACAGGCACCAGACACAACAAAAAACGCCGGGCAGTGCCCGGCGTTTTTCATTCCCGCAATGTTCAGCCGCGCTTACGCTGCGGCAGcac < 1:291346/148‑1 (MQ=255) tgtgGAGCGTTACATGGAGCGCCAGCAGCGGCATTCGAGCAAGGCCTGAGCTAACGACAGGCACCAGACACACCAAAAACCGCCGGGCAGTGCCCGGCGTTTTTCATTCCCGCAATGTTCAGCCGCGCTTACGCTGCGGCAGCACATc < 5:72295/148‑1 (MQ=255) gtgGAGCGTTACATGGAGCGCCAGCAGCGGCATTCGAGCAAGGCCTGAGCTGACGACAGGCACCAGACACAACAAAAAACGCCGGGCAGTGCCCGGCGTTTTTCATTCCCGCAATGTTCAGCCGCGCTTACGCTGCGGCAGCACATCCt > 1:103070/1‑149 (MQ=255) tgGAGCGTTACATGGAGCGCCAGCAGCGGCATTCGAGCAAGGCCTGAGCTGACGACAGGCACCAGACACAACAAAAAACGCCGGGCAGTGCCCGGCGTTTTTCATTCCCGCAATGTTCAGCCGCGCTTACGCTGCGGCAGCACATCCtt < 6:108233/149‑1 (MQ=255) aGCGTTACATGGAGCGCCAGCAGCGGCATTCGAGCAAGGCCTGAGCTGACGACAGGCACCAGACACAACAAAAAACGCCGGGCAGTGCCCGGCGTTTTTCATTCCCGCAATGTTCAGCCGCGCTTACGCTGCGGCAGCACATCCTTGAg < 2:103070/149‑1 (MQ=255) ggAGCGCCAGCAGCGGCATTCGAGCAAGGCCTGAGCTGACGACAGGCACCAGACACAACAAAAAACGCCGGGCAGTGCCCGGCGTTTTTCATTCCCGCAATGTTCAGcc < 7:265976/109‑1 (MQ=255) ggAGCGCCAGCAGCGGCATTCGAGCAAGGCCTGAGCTGACGACAGGCACCAGACACAACAAAAAACGCCGGGCAGTGCCCGGCGTTTTTCATTCCCGCAATGTTCAGcc > 8:265976/1‑109 (MQ=255) ccAGCAGCGGCATTCGAGCAAGGCCTGAGCTGACGACAGGCACCAGACACAACAAAAAACGACGGGCAGTGCCCGGCGTTTTTCATTCCCGCAATGTTCAGCCGCGCTTACGCTGAGGCAGCACATCCTTGAGCTTGGCATGCAtgctg > 5:312048/1‑149 (MQ=255) cGACCAAGGCCTGAGCTGACGACAGGCACCAGACACAACAAAAAACGCCGGGCAGTGCCCGGCGTTTTTCATTCCCGCAATGTTCAGCCGCGCTTACGCTGCGGCAGCACATCCTTGAGCTTGGCATGCATGCTGCGCAGGGTTTtct < 8:267059/148‑1 (MQ=255) gAGCAAGGCCTGAGCTGACGACAGGCACCAGACACAACAAAAAACGCCGGGCAGTGCCCGGCGTTTTTCATTCCCGCAATGTTCAGCCGCGCTTACGCTGCGGCAGCACATCCTTGAGCTTGGCATGCATGCTGCGCAGGGTTTTCTCg > 1:211117/1‑149 (MQ=255) gAGCAAGGCCTGAGCTGACGACAGGCACCAGACACAACAAAAAACGCCGGGCAGTGCCCGGCGTTTTTCATTCCCGCAATGTTCAGCCGCGCTTACGCTGCGGCAGCACATCCTTGAGCTTGGCATGCATGCTGCGCAGGGTTTTCTCg > 1:8420/1‑149 (MQ=255) gCAAGGCCTGAGCTGACGACAGGCACCAGACACAACAAAAAACGCCGGACAGTGCCCGGCGTTTTTCATTCCCGCAATGTTCAGCCGCGCTTACGCTGCGGCAGCACATCCTTGAGCTTGGCATGCATGCTGCGCAGGGTTTtctc < 8:260145/146‑1 (MQ=255) gCAAGGCCTGAGCTGACGACAGGCACCAGACACAACAAAAAACGCCGGACAGTGCCCGGCGTTTTTCATTCCCGCAATGTTCAGCCGCGCTTACGCTGCGGCAGCACATCCTTGAGCTTGGCATGCATGCTGCGCAGGGTTTtctc > 7:260145/1‑146 (MQ=255) aGCTGACGACAGGCACCAGACACAACAAAAAACGCCGGGCAGTGCCCGGCGTTTTTCATTCCCGCAATGTTCAGCCGCGCTTACGCTGCGGCAGCACATCCTTGAGCTTGGCATGCATGCTGCGCAGGGTTTTCTCGGTAGCCGAcc < 2:8420/147‑1 (MQ=255) acgacAGGCACCAGACACAACAAAAAACGCCGGGCAGTGCCCGGCGTTTTTCATTCCCGCAATGTTCAGCCGCGCTTACGCTGCGGCAGCACATCCTTGAGCTTGGCATGCATGCTGCGCAGGGTTTTCTCGGTAGCCGACCAGTCGAt > 4:117387/1‑149 (MQ=255) aGGCACCAGACACAACAAAAAACGCCGGGCAGTGCCCGGCGTTTTTCATTCCCGCAATGTTCAGCCGCGCTTACGCTGCGGCAGCACATCCTTGAGCTTGGCATGCATGCTGCGCAGGGTTTTCTCGGTAGCCGACCAGTCGATGCa < 1:282781/147‑1 (MQ=255) aGGCACCAGACACAACAAAAAACGCCGGGCAGTGCCCGGCGTTTTTCATTCCCGCAATGTTCAGCCGCGCTTACGCTGCGGCAGCACATCCTTGAGCTTGGCATGCATGCTGCGCAGGGTTTTCTCGGTAGCCGACCAGTCGATGCa > 2:282781/1‑147 (MQ=255) gCACCAGACACAACAAAAAACGCCGGGCAGTGCCCGGCGTTTTTCATTCCCGCAATGTTCAGCCGCGCTTACGCTGCGGCAGCACATCCTTGAGCTTGGCATGCATGCTGCGCAGGGTTTTCTCGGTAGCCGACCAGTCGAt < 5:138611/142‑1 (MQ=255) gCACCAGACACAACAAAAAACGCCGGGCAGTGCCCGGCGTTTTTCATTCCCGCAATGTTCAGCCGCGCTTACGCTGCGGCAGCACATCCTTGAGCTTGGCATGCATGCTGCGCAGGGTTTTCTCGGTAGCCGACCAGTCGAt > 6:138611/1‑142 (MQ=255) gCACCAGACACAACAAAAAACGCCGGGCAGTGCCCGGCGTTTTTCATTCCCGCAATGTTCAGCCGCGCTTACGCTGCGGCAGCACATCCTTGAGCTTGGCATGCATGCTGCGCAGGGTTTTCTCGGTAGCCGACCAGTCGATGCAGGCg > 3:174849/1‑149 (MQ=255) acaacaAAAAACGCCGGGCAGTGCCCGGCGTTTTTCATTCCCGCAATGTTCAGCCGCGCTTACGCTGCGGCAGCACATCCTTGAGCTTGGCATGCATGCTGCGCAGGGTTTTCTCGGTAGCCGACCAGTCGATGCAGGCGTCCGTGATc > 1:51983/1‑149 (MQ=255) aacaaAAAACGCCGGGCAGTGCCCGGCGTTTTTCATTCCCGCAATGTTCAGCCGCGCTTACGCTGCGGCAGCACATCCTTGAGCTTGgcatgca < 8:265948/94‑1 (MQ=255) aacaaAAAACGCCGGGCAGTGCCCGGCGTTTTTCATTCCCGCAATGTTCAGCCGCGCTTACGCTGCGGCAGCACATCCTTGAGCTTGgcatgca > 7:265948/1‑94 (MQ=255) aacaaAAAACGCCGGGCAGTGCCCGGCGTTTTTCATTCCCGCAATGTTCAGCCGCGCTTACGCTGCGGCAGCACATCCTTGAGCTTGGcatgcatg > 4:165319/1‑96 (MQ=255) aacaaAAAACGCCGGGCAGTGCCCGGCGTTTTTCATTCCCGCAATGTTCAGCCGCGCTTACGCTGCGGCAGCACATCCTTGAGCTTGGcatgcatg < 3:165319/96‑1 (MQ=255) aacaaAAAACGCCGGGCAGTGCCCGGCGTTTTTCATTCCCGCAATGTTCAGCCGCGCTTACGCTGCGGCAGCACATCCTTGAGCTTGGCATGCATGCTGCGCAGGGTTTTCTCGGTAGCCGCCCAGGCGATGCAGGCGTACGTGATCGa > 8:285530/1‑149 (MQ=255) aaaaaCGCCGGGCAGTGCCCGGCGTTTTTCATTCCCGCAATGTTCAGCCGCGCTTACGCTGCGGCAGCACATCCTTGAGCTTGGCATGCATGCTGCGCAGGGTTTTCTCGGTAGCCGACCAGTCGAt < 7:195928/127‑1 (MQ=255) aaaaaCGCCGGGCAGTGCCCGGCGTTTTTCATTCCCGCAATGTTCAGCCGCGCTTACGCTGCGGCAGCACATCCTTGAGCTTGGCATGCATGCTGCGCAGGGTTTTCTCGGTAGCCGACCAGTCGAt > 8:195928/1‑127 (MQ=255) aaaaaCGCCGGGCACTGCCCGGCGTTTTTCATTCCCGCAATGTTCAGCCGCGCTTACGCTGCGGCAGCACATCCTTGAGCTTGGCATGCATGCTGGGCAGGGTTTTCTCGGTAGCCGACCAGTCGATGCAGGCGTCCGTGATCGa > 1:250756/1‑145 (MQ=255) aaaaaCGCCGGGCACTGCCCGGCGTTTTTCATTCCCGCAATGTTCAGCCGCGCTTACGCTGCGGCAGCACATCCTTGAGCTTGGCATGCATGCTGCGCAGGGTTTTCTCGGTAGCCGACCAGTCGATGCAGGCGTCCGTGATCGa < 2:250756/145‑1 (MQ=255) aaaCGCCGGGCAGTGCCCGGCGTTTTTCATTCCCGCAATGTTCAGCCGCGCTTACGCTGCGGCAGCACATCCTTGAGCTTGGCATGCATGCTGCGCAGGGTTTTCTCGGTAGCCGACCAGTCGATGCAGGCGTCCGTGATCGACACGcc < 3:117387/149‑1 (MQ=255) aaCGCCGGGCAGTGCCCGGCGTTTTTCATTCCCGCAATGTTCAGCCGCGCTTACGCTGCGGCAGCACATCCTTGAGCTTGGCATGCATGCTGCGCAGGGTTTTCTCGGTAGCCGACCAGTCGATGCAGGCGTCCGTGATCGACACGCCa > 1:38365/1‑149 (MQ=255) ggCAGTGCCCGGCGTTTTTCATTCCCGCAATGTTCAGCCGCGCTTACGCTGCGGCAGCACATCCTTGAGCTTGGCATGCATGCTGCGCAGGGTTTTCTCGGTAGCCGACCAGTCGATGCAGGCGTCCGTGATCGACACGCCATACTGc > 6:294786/1‑148 (MQ=255) | GCTCTGGAGTACGCCGAGCAGATGGGGTACACGGTGATCCCGTCTTGCTCATATGTGGAGCGTTACATGGAGCGCCAGCAGCGGCATTCGAGCAAGGCCTGAGCTGACGACAGGCACCAGACACAACAAAAAACGCCGGGCAGTGCCCGGCGTTTTTCATTCCCGCAATGTTCAGCCGCGCTTACGCTGCGGCAGCACATCCTTGAGCTTGGCATGCATGCTGCGCAGGGTTTTCTCGGTAGCCGACCAGTCGATGCAGGCGTCCGTGATCGACACGCCATACTGC > NC_002947/2651134‑2651419 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |