Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 272,008 | A→T | 13.2% | intergenic (+13/+16) | PP_0218 → / ← metP | sensory box protein/L,D‑methionine D‑methionine ABC transporter permease |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 272,008 | 0 | A | T | 13.2% | 130.7 / 11.5 | 53 | intergenic (+13/+16) | PP_0218/metP | sensory box protein/L,D‑methionine D‑methionine ABC transporter permease |
Reads supporting (aligned to +/- strand): ref base A (23/23); new base T (5/2); total (28/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.26e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.44e-01 |
TGGGGATGCAGGTGCATGCCGAGGGCATCGAGCAGGCGGAACAGGCCAGCTTCCTGCTGCAGGAGGAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCTACCAGCATGGCGATCACGGTCAGCATGATCTGGCTGTCGAAACGCTGGTAGCCATACCGATAGGCGA > NC_002947/271862‑272154 | tGGGGATGCAGGTGCATGCCGAGGGCATCGAGCAGGCGGAACAGGCCAGCTTCCTGCTGCAGGAGGAGTGCCAGTTGGGGCAGGGGTACCGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAag < 5:206175/149‑1 (MQ=255) gATGCAGGTGCATGCCGAGGGCATCGAGCAGGCGGAACAGGCCAGCTTCCTGCTGCAGGAGGAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAagcagc < 7:105637/149‑1 (MQ=255) aGGTGCATGCCGAGGGCATCGAGCAGGCGGAACAGGCCAGCTTCCTGCTGCAGGAGGAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCt > 8:272593/1‑147 (MQ=255) aTGCCGAGGGCATCGAGCAGGCGGAACAGGCCAGCTTCCTGCTGCAGGAGGAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCaatgt > 1:263631/1‑143 (MQ=255) aTGCCGAGGGCATCGAGCAGGCGGAACAGGCCAGCTTCCTGCTGCAGGAGGAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGAttt > 6:154090/1‑148 (MQ=255) tGCCGAGGGCATCGAGCAGGCGGAACAGGCCAGCTTCCTGCTGCAGGAGGAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTc > 3:162949/1‑148 (MQ=255) ccGAGGGCATCGAGCAGGCGGAACAGGCCAGCTTCCTGCTGCAGGAGGAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAAc > 3:231332/1‑149 (MQ=255) aGCAGGCGGAACAGGCCAGCTTCCTGCTGCAGGAGGAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCTTTGCAGcccggt < 1:203840/128‑4 (MQ=255) aGCAGGCGGAACAGGCCAGCTTCCTGCTGCAGGAGGAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCTTTGCAGcccggt > 2:203840/1‑125 (MQ=255) cAGGCCAGCTTCCTGCTGCAGGAGGAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAgg < 2:290730/149‑1 (MQ=255) aGGCCAGCTTCCTGCTGCAGGAGGAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGc > 5:166998/1‑149 (MQ=255) ggCCAGCTTCCTGCCGCAGGAGGAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCg < 1:126071/149‑1 (MQ=255) tgctgcAGGAGGAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGcc > 8:258806/1‑147 (MQ=255) tgctgcAGGAGGAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCa > 8:174203/1‑149 (MQ=255) ctgcAGGAGGAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGc < 4:43693/149‑1 (MQ=255) ctgcAGGAGGAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGc < 4:231332/149‑1 (MQ=255) cAGGAGGAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCt < 7:174203/147‑1 (MQ=255) cAGGAGGAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTg < 4:162949/148‑1 (MQ=255) aggaggAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGTCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGa > 2:76784/1‑149 (MQ=255) aggaggAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGa < 7:155575/149‑1 (MQ=255) gTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGc > 7:79514/1‑149 (MQ=255) gTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGc < 8:79514/149‑1 (MQ=255) aGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGc > 5:268723/1‑144 (MQ=255) aGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGc < 6:268723/144‑1 (MQ=255) gTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGAt < 7:249680/88‑1 (MQ=255) gTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGAt > 8:249680/1‑88 (MQ=255) gggCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGc > 3:235704/1‑148 (MQ=255) gCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAAc > 7:239246/1‑135 (MQ=255) gCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAAc < 8:239246/135‑1 (MQ=255) gggTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAATCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCTACCAGc < 1:248319/149‑1 (MQ=255) gTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCTACCAGCATGGCGa < 6:166998/148‑1 (MQ=255) gggCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCTACCAGCATGGCGATCACg < 5:154090/149‑1 (MQ=255) ggcggcCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCTACCAGCATGGCGATCACgg < 7:258806/149‑1 (MQ=255) cggcCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCTACCAGCATGGCGATCACGGt > 4:265074/1‑148 (MQ=255) cAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCTACCAGCATGGCGATCACGGTCAGCa > 3:211014/1‑149 (MQ=255) gCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTTGATCAACGCCACTAACGCTACCAGCATGGCGATCACGGTCAGCATGATCTgg < 1:76784/149‑1 (MQ=255) tGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCTACCAGCATGGCGATCACGGTCAGCATGa > 3:227749/1‑142 (MQ=255) tGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCTACCAGCATGGCGATCACGGTCAGCATGa < 4:227749/142‑1 (MQ=255) cTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACg > 2:201732/1‑105 (MQ=255) cTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACg < 1:201732/105‑1 (MQ=255) ggATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCTACCAGCATGGCGATCACGGTCAGCATGATCTGGCTGTCGAAACGCTgg > 3:114627/1‑147 (MQ=255) ggATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCTACCAGCATGGCGATCACGGTCAGCATGATCTGGCTGTCGAAACGCTGGTa < 4:235704/149‑1 (MQ=255) atctgagggCTGCTTTGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCTACCAGCATGGCGATCACGGTCAGCATGATCTGGCTGTCGAAACGCTGGTAGCCa > 7:74358/7‑148 (MQ=255) tgagggCTGCTTTGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCTACCAGCATGGCGATCACGGTCAGCATGATCTGGCTGt > 8:192691/4‑128 (MQ=255) tgagggCTGCTTTGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCTACCAGCATGGCGATCACGGTCAGCATGATCTGGCTGt < 7:192691/125‑1 (MQ=255) aCCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCTACCAGCATGGCGATCACGGTCAGCATGATCTGGCTGTCGAAACGCTGGTAGCCATAcc > 4:21734/1‑149 (MQ=255) gagggCTGCTTTGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCTACCAGCATGGCGATCACGGTCAGCATGATCTGGCTGTCGAAACGCTGGTAGCCATAcc > 7:272003/3‑148 (MQ=255) gagggCTGCTTTGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCTACCAGCATGGCGATCACGGTCAGCATGATCTGGCTGTCGAAACGCTGGTAGCCATAcc > 7:267992/3‑148 (MQ=255) ccGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCTACCAGCATGGCGATCACGGTCAGCATGATCTGGCTGTCGAAACGCTGGTAGCCATAcc < 7:272593/148‑1 (MQ=255) tGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCTACCAGCATGGCGATCACGGTCAGCATGATCTGGCTGTCGAAACGCTGGTAGCCATACCGATAGGc > 8:73428/1‑149 (MQ=255) cAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCTACCAGCATGGCGATCACGGTCAGCATGATCTGGCTGTCGAAACGCTGGTAGCCATAc > 2:118335/1‑139 (MQ=255) cAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCTACCAGCATGGCGATCACGGTCAGCATGATCTGGCTGTCGAAACGCTGGTAGCCATAc < 1:118335/139‑1 (MQ=255) cAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCTACCAGCATGGCGATCACGGTCAGCATGATCTGGCTGTCGAAACGCTGGTAGCCATACCGATAGGCGa > 1:216574/1‑149 (MQ=255) | TGGGGATGCAGGTGCATGCCGAGGGCATCGAGCAGGCGGAACAGGCCAGCTTCCTGCTGCAGGAGGAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCTACCAGCATGGCGATCACGGTCAGCATGATCTGGCTGTCGAAACGCTGGTAGCCATACCGATAGGCGA > NC_002947/271862‑272154 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |