Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,402,506 | G→C | 9.1% | intergenic (+30/‑122) | PP_3010 → / → PP_3011 | hypothetical protein/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,402,506 | 0 | G | C | 9.1% | 152.4 / 3.1 | 52 | intergenic (+30/‑122) | PP_3010/PP_3011 | hypothetical protein/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base G (25/22); new base C (2/3); total (27/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.62e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.30e-01 |
AGGGGCTTGTAGAGTTGCGGGGCACGGGAAGCGAGCGCCACTTCACGGCCTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTCAAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTTGGATG > NC_002947/3402358‑3402640 | agGGGCTTGTAGAGTTGCGGGGCACGGGAAGCGAGCGCCACTTCACGGCCTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCccgccg > 4:190495/1‑149 (MQ=255) gCGGGGCACGGGAAGCGAGCGCCACTTCACGGCCTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCTCTCGACGGCGGGCtat < 3:125825/148‑3 (MQ=255) ggCACGGGAAGCGAGCGCCACTTCACGGCCTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTtgtg > 1:230415/1‑149 (MQ=255) gCACGGGAAGCGAGCGCCACTTCAGGGCCTATCAACGTCATGCCTTGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTTATCATCCAACCCGCACACGAATAGCCCGCCGTCGTGAGCGGGCTTTTtgtgt < 3:187453/149‑1 (MQ=255) gCACGGGAAGCGAGCGCCACTTCACGGCCTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAAACATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTtgtgt > 1:5734/1‑149 (MQ=255) gAAGCGAGCGCCACTTCACGGCCTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCAt > 3:74170/1‑149 (MQ=255) cgagcgCCACTTCACGGCCTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTc > 1:157785/1‑120 (MQ=255) cgagcgCCACTTCACGGCCTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTc < 2:157785/120‑1 (MQ=255) gagcgCCACTTCACGGCCTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCt < 2:230415/149‑1 (MQ=255) ccACTTCACGGCCTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTtg < 4:250114/130‑1 (MQ=255) ccACTTCACGGCCTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTtg > 3:250114/1‑130 (MQ=255) cACTTCACGGCCTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCgg > 7:268879/1‑149 (MQ=255) cACGGCCTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAAc < 2:5734/148‑1 (MQ=255) gCCTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTc > 1:54201/1‑148 (MQ=255) aaCGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTCAAAAAAAg > 2:177622/1‑149 (MQ=255) aaCGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTCAAAAAAAg > 7:283108/1‑149 (MQ=255) aaCGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTCAAAAAAAg > 7:168697/1‑149 (MQ=255) gATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTCAAAAAAAGGGAgg > 6:52007/1‑149 (MQ=255) aTGCCTGGTACGACCATGGCAGGTTGCTTGATTCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTCAAAAAAAGGGCggg < 7:99617/149‑1 (MQ=255) aTGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTCAAAAAAAGGGCggg < 1:212158/149‑1 (MQ=255) tGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTCAAAAAAAGGGCGGGt < 1:177622/149‑1 (MQ=255) ccTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTCAAAAAAAGGGCGGGTg > 3:185428/1‑148 (MQ=255) tGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATTGCCTGCCCGGCAACGTTCAAAAAAAGGGc < 6:26003/141‑1 (MQ=255) tGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATTGCCTGCCCGGCAACGTTCAAAAAAAGGGc > 5:26003/1‑141 (MQ=255) tGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTCAAAAAAAGGGCGGGTGGAg > 7:98432/1‑149 (MQ=255) tACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTCAAAAAAAGGGCGGGTGGAGCCg < 5:89565/149‑1 (MQ=255) gACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTCAAAAAAAGGGCGGGTGGAGCCGGTa > 5:77428/1‑149 (MQ=255) cATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTCAAAAAAAGGGCGGGTGGAGCCGGTATgg < 8:268879/149‑1 (MQ=255) cAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTCAAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGa < 3:190495/149‑1 (MQ=255) aGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTCAAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGag < 4:74170/149‑1 (MQ=255) gcACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGAGTGCCCATCGCCTGCCCGGCAACGTTCAAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGc < 4:185428/148‑1 (MQ=255) cACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTCAAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGc < 5:52007/147‑1 (MQ=255) cTGATGTGTTCAATAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTCAATAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGGTGCTTTGCAttt < 2:206675/149‑1 (MQ=255) aTGTGTTCAAAAGCTTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTCAAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGc < 8:283108/148‑1 (MQ=255) tgtTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTCAAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGc > 8:258548/1‑149 (MQ=255) gtTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTCAAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGcc > 1:233191/1‑149 (MQ=255) ttaaaaaGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTCAAAAAAAGGGCTGGTGGAGTCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGccc > 1:138840/4‑149 (MQ=255) ttCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTCAAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGccc < 6:77428/149‑1 (MQ=255) ttCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCAGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTCAAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGccc > 5:174100/1‑149 (MQ=255) aaGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTCAAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGCcccgccc > 2:265027/1‑149 (MQ=255) gCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTCAAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGCcccgcccg > 1:111030/1‑148 (MQ=255) gCGTAATAATACAACCCCCACAACAATAGCCAGCCGTCGAGAGCGGTCTTTTTGTGTGCCCATCGCCTGACCGCCAACGTTAAAAAAAAGGGCGGGTGCAGCCCGTATGGCCTGAGCAGCGATGCTTTGCATTTGCCGGCaccgccag > 2:111033/1‑146 (MQ=255) cGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTCAAAAAAAGGGCGGGTGGAGCCGGTa < 2:256437/106‑1 (MQ=255) aaTCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTCAAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGCCCCGCCCGTAata > 4:219136/1‑149 (MQ=255) aaCCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTCAAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGt < 8:168697/149‑1 (MQ=255) atgggcacacaAAAAGCCCGCTCTCGACGGCGGGCTATTGGTGTGCCCATCGCCTGCCCGGCAACGTTCAAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCtt < 5:181353/109‑1 (MQ=21) atgggcacacaAAAAGCCCGCTCTCGACGGCGGGCTATTGGTGTGCCCATCGCCTGCCCGGCAACGTTCAAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCtt > 4:261025/6‑114 (MQ=21) atgggcacacaAAAAGCCCGCTCTCGACGGCGGGCTATTGGTGTGCCCATCGCCTGCCCGGCAACGTTCAAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCtt < 3:261025/109‑1 (MQ=21) atgggcacacaAAAAGCCCGCTCTCGACGGCGGGCTAATGGTGTGCCCATCGCCTGCCCGGCAACGTACAAAAAAAGGGCGGGTGGAGCCCGAATGGCCTGAGCAGCGTTGCtt > 6:181353/6‑114 (MQ=18) cccACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCATCGTTCAAAAAAAGGGCGTGTGGAGCCGGTTTGGCCTGAGCATCGTTGCTTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTAttt < 1:111033/149‑1 (MQ=255) cccACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTCAAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTAttt < 1:265027/149‑1 (MQ=255) ccACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGGAACGTTGAAAAACAGGGCGGCTGGAGCCGGTATGGCCTGAGCAGAGTTGCTTTGCATTTGGCGGCCACGCCCGTAGTCTTCGTGGttggtg > 8:121050/1‑144 (MQ=255) cAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTCAAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTtggatg > 2:218172/1‑147 (MQ=255) gccgTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTCAAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTtg < 7:53586/134‑1 (MQ=255) gccgTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTCAAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTtg > 8:53586/1‑134 (MQ=255) | AGGGGCTTGTAGAGTTGCGGGGCACGGGAAGCGAGCGCCACTTCACGGCCTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTCAAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTTGGATG > NC_002947/3402358‑3402640 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |