Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 3,522,676 G→A 11.2% intergenic (+463/‑234) PP_5584 → / → PP_3113 hypothetical protein/transposase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,522,6760GA11.2% 117.7 / 2.7 44intergenic (+463/‑234)PP_5584/PP_3113hypothetical protein/transposase
Reads supporting (aligned to +/- strand):  ref base G (21/18);  new base A (3/2);  total (24/20)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GCCCACGGTAAAGATCCCCGCGCCACTGGCCGCGGCCGTCCCCGGCAATGAGTCCTCGAAGGCCAGCGCTTGCCCGGCCTCGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTC  >  NC_002947/3522528‑3522824
                                                                                                                                                         |                                                                                                                                                    
gCCCACGGTAAAGATCCCCGCGCCACTGGCCGCGGCCGTCCCCGGCAATGAGTCCTCGAAGGCCAGCGCTTGCCCGGCCTCGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCgg                                                                                                                                                      <  1:183547/149‑1 (MQ=255)
 cccACGGTAAAGATCCCCGCGCCACTGGCCGCGGCCGTCCCCGGCAATGAGTCCTCGAAGGCCAGCGCTTGCCCGGCCTCGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGc                                                                                                                                                     >  4:61407/1‑149 (MQ=255)
  ccACGGTAAAGATCCCCGCGCCACTCGCCGCGGCCGTCCCCGGCAAACAGTCCTCGAAGGCCAGCGCTTGCCCGGCCTCGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGc                                                                                                                                                     >  8:64271/1‑148 (MQ=255)
        tAAAGATCCCCGCGCCACTGGCCGCGGCCGTCCCCGGCAATGAGTCCTCGAAGGCCAGCGCTTGCCCGGCCTCGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAg                                                                                                                                               >  6:93308/1‑148 (MQ=255)
                cccGCGCCACTGGCCGCGGCCGTCCCCGGCAATGAGTCCTCGAAGGCCAGCGCTTGCCCGGCCTCGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTc                                                                                                                                      <  6:312970/149‑1 (MQ=255)
                                     gTCCCCGGCAATGAGTCCTCGAAGGCCAGCGCTTGCCCGGCCTCGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCAt                                                                                                                 >  5:47082/1‑149 (MQ=255)
                                      tCCCCGGCAATGAGTCCTCGAAGGCCAGCGCTTGCCGCGGCCTCGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCAt                                                                                                                 >  1:49693/1‑149 (MQ=255)
                                      tCCCCGGCAATGAGTCCTCGAAGGCCAGCGCTTGCCCGGCCTCGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCTGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATg                                                                                                                >  1:303278/1‑149 (MQ=255)
                                       ccccGGCAATGAGTCCTCGAAGGCCAGCGCTTGCCCGGCCTCGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATgg                                                                                                               <  5:93308/149‑1 (MQ=255)
                                           ggCAATGAGTCCTCGAAGGCCAGCGCTTGCCCGGCCTCGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCTGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGtt                                                                                                           <  2:303278/149‑1 (MQ=255)
                                            gCAATGAGTCCTCGAAGGCCAGCGCTTGCCCGGCCTCGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGtt                                                                                                           >  5:65044/1‑148 (MQ=255)
                                                    taatCGAAGGCCAGCGCTTGCCCGGCCTCGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGACCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCAtgtg                                                                                                  >  7:196361/4‑149 (MQ=255)
                                                    tCCTCGAAGGCCAGCGCTTGCCCGGCCTCGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGACCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCAtgtg                                                                                                  >  7:196362/1‑149 (MQ=255)
                                                      cTCGAAGGCCAGCGCTTGCCCGGCCTCGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGc                                                                                                 <  7:64271/148‑1 (MQ=255)
                                                              ccAGCGCTTGCCCGGCCTCGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTc                                                                                        <  3:61407/149‑1 (MQ=255)
                                                               cAGCGCTTGCCCGGCCTCGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCAGGTAGTCCAGCTCTTACGACCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCg                                                                                           >  1:250093/1‑149 (MQ=255)
                                                                       gCCCGGCCTCGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGt                                                                               >  1:203820/1‑149 (MQ=255)
                                                                        cccGGCCTCGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTg                                                                              >  5:36007/1‑149 (MQ=255)
                                                                             cgaggtacacCCAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGt                                                                           <  3:17884/142‑1 (MQ=255)
                                                                               cTCGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCa                                                                                                         >  2:307101/1‑116 (MQ=255)
                                                                               cTCGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCa                                                                                                         <  1:307101/116‑1 (MQ=255)
                                                                                 cGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTc                                                                      >  5:52512/1‑149 (MQ=255)
                                                                                       ccAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGACCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACg                                                                <  8:196361/149‑1 (MQ=255)
                                                                                       ccAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGACCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACg                                                                <  8:196362/149‑1 (MQ=255)
                                                                                            cGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACAt                                                           <  1:267031/149‑1 (MQ=255)
                                                                                                       ggTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCAt                                                >  6:294610/1‑149 (MQ=255)
                                                                                                         tGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATgg                                              <  5:248523/149‑1 (MQ=255)
                                                                                                             gTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATggg                                             >  1:43133/1‑146 (MQ=255)
                                                                                                             gTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATggg                                             <  2:43133/146‑1 (MQ=255)
                                                                                                              tAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTg                                         <  6:52512/149‑1 (MQ=255)
                                                                                                               aGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTgg                                        >  4:72139/1‑149 (MQ=255)
                                                                                                                gggCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTgg                                        <  6:65044/148‑1 (MQ=255)
                                                                                                                  gCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGc                                                         >  1:48070/1‑129 (MQ=255)
                                                                                                                  gCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGc                                                         <  2:48070/129‑1 (MQ=255)
                                                                                                                   cAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGc                                      >  1:282314/1‑147 (MQ=255)
                                                                                                                   cAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGc                                      <  2:282314/147‑1 (MQ=255)
                                                                                                                   cAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCAt                                    >  5:23757/1‑149 (MQ=255)
                                                                                                                     gCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGATCACCACGCACATGCCCAGGCCCATGGCATCGGCATgt                                  <  2:250093/149‑2 (MQ=255)
                                                                                                                      cGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGc                                  <  6:47082/148‑1 (MQ=255)
                                                                                                                       gggTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCTTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCTATGCCATGGGCCTGGGCATGCTc                                <  6:36007/149‑1 (MQ=255)
                                                                                                                         gTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTc                                >  1:291360/1‑147 (MQ=255)
                                                                                                                                    gCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCaa                    >  5:253699/1‑148 (MQ=255)
                                                                                                                                       cGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAg                 <  2:49693/149‑1 (MQ=255)
                                                                                                                                              cAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTg            >  2:227861/1‑149 (MQ=255)
                                                                                                                                                    ttCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTg      >  2:178899/1‑149 (MQ=255)
                                                                                                                                                         gCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTc  >  1:212427/1‑149 (MQ=255)
                                                                                                                                                         |                                                                                                                                                    
GCCCACGGTAAAGATCCCCGCGCCACTGGCCGCGGCCGTCCCCGGCAATGAGTCCTCGAAGGCCAGCGCTTGCCCGGCCTCGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTC  >  NC_002947/3522528‑3522824

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: