Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,641,242 | C→T | 7.7% | W179* (TGG→TAG) ‡ | PP_3208 ← | Pdr/VanB family oxidoreductase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,641,242 | 0 | C | T | 7.7% | 148.4 / 2.2 | 52 | W179* (TGG→TAG) ‡ | PP_3208 | Pdr/VanB family oxidoreductase |
Reads supporting (aligned to +/- strand): ref base C (20/28); new base T (2/2); total (22/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.86e-01 |
GACGTGCAAGGTGGGCTCTGAGGCCTGGAAATGTTCGCGGTGAAGCGCCGTGGTTGGCCAGCCGCTTGCAAGCGCGACGCGTTCGACACACGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCGGGGCGCGCAAGCCTGCATGAACCTCGGTATTCGCATCGAGGTACTGGATAAAAGGCACCTGTTCGGCATCGCGGGTGAAAAACAGCAAGCGCACCGACCGACCTTGCGC > NC_002947/3641103‑3641390 | gACGTGCAAGGTGGGCTCTGAGGCCTGGAAATGTTCGCGGTGAAGCGCCGTGGTTGGCCAGCCGCTTGCAAGCGCGACGCGTTCGACACACGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGc < 4:214029/148‑1 (MQ=255) gTGCAAGGTGGGCTCTGAGGCCTGGAAATGTTCGCGGTGAAGCGCCGTGGTTGGCCAGCCGCTTGCAAGCGCGACGCGTTCGACACACGCCATGAACCCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGGCCTGGGACGGCagcg < 6:144534/149‑4 (MQ=255) cAAGGTGGGCTCTGAGGCCTGGAAATGTTCGCGGTGAAGCGCCGTGGTTGGCCAGCCGCTTGCAAGCGCGACGCGTTCGACACACGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAgtgt < 2:71351/148‑1 (MQ=255) ggggCTCTGAGGCCTGGAAATGTTCGCGGTGAAGCGCCGTGGGTGGCCAGCCGGTTGCAAGCGCGACTCGTTCTACACACTCCTTGAAACCGGCAGGGCCACAGATTTAGAGGCTTGGGCTGCCGTGCCAGGCCGGCAAGTGTtcctc < 2:108654/147‑1 (MQ=255) ctctGAGGCCTGGAAATGTTCGCGGTGAAGCGCCGTGGTTGGCCAGCCGCTTGCAAGCGCGACGCGTTCGACACACGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTtc < 7:169325/141‑1 (MQ=255) ctctGAGGCCTGGAAATGTTCGCGGTGAAGCGCCGTGGTTGGCCAGCCGCTTGCAAGCGCGACGCGTTCGACACACGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTtc > 8:169325/1‑141 (MQ=255) ctctGAGGCCTGGAAATGTTCGCGGTGAAGCGCCGTGGTTGGCCAGCCGCTTGCAAGCGCGACGCGTTCGACACACGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAgg > 8:7229/1‑148 (MQ=255) aGGCCTGGAAATGTTCGCGGTGAAGCGCCGTGGTTGGCCAGCCGCTTGCAAGCGCGACGCGTTCGACACACGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCg > 8:31506/1‑149 (MQ=255) gCCTGGAAATGTTCGCGGTGAAGCGCCGTGGTTGGCCAGCCGCTTGCAAGCGCGACGCGTTCGACACACGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCGGt > 3:42834/1‑149 (MQ=255) cTGGAAATGTTCGCGGTGAAGCGCCGTGGTTGGCCAGCCGCTTGCAAGCGCGACGCGTTCGACACACGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCGGTGa < 8:270156/149‑1 (MQ=255) aTGTTCGCGGTGAAGCGCCGTGGTTGGCCAGCCGCTTGCAAGCGCGACGCGTTCGACACACGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCg < 6:222205/149‑1 (MQ=255) gcgcCGTGGTTGGCCAGCCGCTTGCAAGCGCGACGCGTTCGACACACGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCGGGGCGCGCAAGCCt > 2:302961/1‑149 (MQ=255) gcgcCGTGGTTGGCCAGCCGCTTGCAAGCGCGACGCGTTCGACACACGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCGGGGCGCGCAAGCCt < 7:7229/149‑1 (MQ=255) gcgcCGTGGTTGGCCAGCCGCTTGCAAGCGCGACGCGTTCGACACACGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCGGGGCGCGCAAGCCt > 1:81645/1‑149 (MQ=255) cGTGGTTGGCCAGCCGCTTGCAAGCGCGACGCGTTCGACACACGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCGGGGCGCGCAAGCCTGCAt < 1:302961/149‑1 (MQ=255) cGTGGTTGGCCAGCCGCTTGCAAGCGCGACGCGTTCGACACACGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCGGGGCGCGCAAGCCTGCAt > 7:204726/1‑149 (MQ=255) ggTTGGCCAGCCGCTTGCAAGCGCGACGCGTTCGACACACGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGGGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCg > 1:97102/1‑128 (MQ=255) ggTTGGCCAGCCGCTTGCAAGCGCGACGCGTTCGACACACGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCg < 2:97102/128‑1 (MQ=255) gTTGGCCAGCCGCTTGCAAGCGCGACGCGTTCGACACACGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCGGGGCGCGCAAGCCTGCATGaa < 4:137696/148‑1 (MQ=255) gTTGGCCAGCCGCTTGCAAGCGCGACGCGTTCGACACACGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCGGGGCGCGCAAGCCTGCATGAAc > 8:207341/1‑149 (MQ=255) gTTGGCCAGCCGCTTGCAAGCGCGACGCGTTCGACACACGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCGGGGCGCGCAAGCCTGCATGAAc > 2:192038/1‑149 (MQ=255) ggCCAGCCGCTTGCAAGCGCGACGCGTTCGACACACGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCGGGGCGCGCAAGCCTGCATGAACCTc > 5:56730/1‑149 (MQ=255) gCCAGCCGCTTGCAAGCGCGACGCGTTCGACACACGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCGGGGCGCGCAAGCCTGCATGAACCTCg < 7:207341/149‑1 (MQ=255) gCCAGCCGCTTGCAAGCGCGACGCGTTCGACACACGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCGGGGCGCGCAAGCCTGCATGAACCTCg < 7:242683/149‑1 (MQ=255) gCCAGCCGCTTGCAAGCGCGACGCGTTCGACACACGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCGGGGCGCGCAAGCCTGCATGAACCTCg < 1:192038/149‑1 (MQ=255) gCCAGCCGCTTGCAAGCGCGACGCGTTCGACACACGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCGGGGCGCGCAAGCCTGCATGAACCTCg < 8:204726/149‑1 (MQ=255) aGCCGCTTGCAAGCGCGACGCGTTCGACACACGCCATGAACCCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCGGGGCGCGCAAGCCTGCATGAACCTCGGTa < 8:274514/149‑1 (MQ=255) ccGCTTGCAAGCGCGACGCGTTCGACACACGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCGGGGCGCGCAAGCCTGCATGAACCTCGGTAtt > 4:41991/1‑149 (MQ=255) gCAAGCGCGACGCGTTCGAGACACGCCATGAAACCGGGAGGGCCAGAGCAATAGAGGCTTGCGCTGCCGTCCCTGGCCGGCAAGTGTTCCTCCAGGTA‑CGCGGTGATCATCGGGGCGCGCAAGCCTGCATGAACCTCGGTATTCGCAt < 2:63775/148‑1 (MQ=255) cAAGCGCGACGCGTTCGACACACGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCGGGGCGCGCAAGCCTGCATGAACCTCGGTATTCGCATc < 4:42834/148‑1 (MQ=255) cAAGCGCGACGCGTTCGACACACGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCGGGGCGCGCAAGCCTGCATGAACCTCGGTATTCGCATc > 6:37791/1‑148 (MQ=255) aaGCGCGACGCGTTCGACACACGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCGGGGCGCGCAAGCCTGCATGAACCTCGGTATTCGCATCGa < 5:37791/149‑1 (MQ=255) cgTTCGACACACTCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCGGGGCGCGCAAGCCTGCATGAACCTCGGTATTCGCATCGAGGTACTGGAt < 6:56730/149‑1 (MQ=255) cgTTCGACACACGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCGGGGCGCGCAAGCCTGCATGAACCTCGGTATTCGCATCGAGGTACTGGAt < 7:31506/149‑1 (MQ=255) gACACCCGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCGTGCGCTGCCGTCCCAGGCCGTCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCGGGGCGCGCAAGCCTGCATGAACCTCGGTATTCGCATCGAGGTACTGGATaaaa < 3:180985/148‑1 (MQ=255) cacGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCGGGGCGCGCAAGCCTGCATGAACCTCGGTATTCGCATCGAGGTACTGGATAAAAGGCAc < 3:41991/149‑1 (MQ=255) acGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCGGGGCGCGCAAGCCTGCATGAACCTCGGTATTCGCATCGAGGTACTGGATaa > 8:215313/1‑141 (MQ=255) acGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCGGGGCGCGCAAGCCTGCATGAACCTCGGTATTCGCATCGAGGTACTGGATaa < 7:215313/141‑1 (MQ=255) acGCCATGAAACCGGCAGGGACACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGGAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCGGGGCGCGCAAGCCTGCATGAACCTCGGTATTCGCATCGAGGTCCTGGATAAAAGGCAcc > 4:193155/1‑149 (MQ=255) aTGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCGGGGCGCGCAAGCCTGCATGAACCTCGGTATTCGCATCGAGGTACTGGATAAAAGGCACCTGTTc > 2:20454/1‑149 (MQ=255) aaaCCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCGGGGCGCGCAAGCCTGCATGAACCTCGGTATTCGCATCGAGGTACTGGATAAAAGGCACCTGTTCgg > 6:148092/1‑148 (MQ=255) gCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGTCCGGCAAGTGTTCCTCCAGGTA‑CCCGGCGCTGATCGGGGCGCGCAAGCCTGCATGAACCTCGGTATTCGCCTCGAGGTACTGGATAAAAGGCACCTGTTCGGCATCGCGGGTGa < 4:62276/149‑1 (MQ=255) cacaGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCGGGGCGCGCAAGCCTGCATGAACCTCGGTATTCGCATCGAGGTACTGGATAAAAGGCACCTGTTCGGCATCGCGGGTGaaa < 2:81645/149‑1 (MQ=255) caGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCGGGGCGCGCAAGCCTGCATGAACCTCGGTATTCGCATCGa < 5:164884/106‑1 (MQ=255) caGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCGGGGCGCGCAAGCCTGCATGAACCTCGGTATTCGCATCGa > 6:164884/1‑106 (MQ=255) gCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCGGGGCGCGCAAGCCTGCATGAACCTCGGTATTCGCATCGAGGTACTGGATAAAAGGCACCTGTTCGGCATCGCGGGTGAAAAACAGCAAgcgc < 3:193155/148‑1 (MQ=255) ttGCGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCGGGGCGCGCAAGCCTGCATGAACCTCGGTATTCGCATCGAGGTACTGGATAAAAGGCACCTGTTCGGCATCGCGGGTGAAAAACAGCaa > 3:155537/1‑142 (MQ=255) ttGCGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCGGGGCGCGCAAGCCTGCATGAACCTCGGTATTCGCATCGAGGTACTGGATAAAAGGCACCTGTTCGGCATCGCGGGTGAAAAACAGCaa < 4:155537/142‑1 (MQ=255) acacttGCCGGCCTGGGACGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCGGGGCGCGCAAGCCTGCATGAACCTCGGTATTCGCATCGAGGTACTGGATAAAAGGCACCTGTTCGGCATCGCGGGTGAAAAACAGCAAGCGCacc > 1:224225/6‑148 (MQ=255) cttGCCGGCCTGGGACGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCGGGGCGCGCAAGCCTGCATGAACCTCGGTATTCGCATCGAGGTACTGGATAAAAGGCACCTGTTCGGCATCGCGGGTg > 7:89270/3‑127 (MQ=255) cttGCCGGCCTGGGACGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCGGGGCGCGCAAGCCTGCATGAACCTCGGTATTCGCATCGAGGTACTGGATAAAAGGCACCTGTTCGGCATCGCGGGTg < 8:89270/125‑1 (MQ=255) ccGTCCCAGGCCGGCAAGTGTTCCTCCAGGTATCCCGGTGATCATCGGGGCGCGCAAGCCTGCATGAACCTCTGTATACGCAACGAGGTACTGGATAAAAGGCACCTGTTCGGCAACGCGGGTGAAAAACAGCAAGCGCAccgaccga > 1:36637/1‑148 (MQ=255) cAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCGGGGCGCGCAAGCCTGCATGAACCTCGGTATTCGCATCGAGGTACTGGATAAAAGGCACCTGTTCGGCATCGCGGGTGAAAAACAGCAAGCGCACCGACCGACCTTgcgc > 4:265718/1‑149 (MQ=255) | GACGTGCAAGGTGGGCTCTGAGGCCTGGAAATGTTCGCGGTGAAGCGCCGTGGTTGGCCAGCCGCTTGCAAGCGCGACGCGTTCGACACACGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCCTCCAGGTA‑CCCGGTGATCATCGGGGCGCGCAAGCCTGCATGAACCTCGGTATTCGCATCGAGGTACTGGATAAAAGGCACCTGTTCGGCATCGCGGGTGAAAAACAGCAAGCGCACCGACCGACCTTGCGC > NC_002947/3641103‑3641390 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |