Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,049,176 | A→T | 7.0% | D576V (GAC→GTC) | quiA → | quinate dehydrogenase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,049,176 | 0 | A | T | 7.0% | 166.2 / 3.1 | 57 | D576V (GAC→GTC) | quiA | quinate dehydrogenase |
Reads supporting (aligned to +/- strand): ref base A (24/28); new base T (2/2); total (27/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.95e-01 |
TACCGGTCAAGCCAAGCAACATCCCGAACGAGCCGTACTCCCCAACCCAGCCCAAGTCGGTGGGCATGCCACAGATCGGCGCGCAGACCCTGACCGAATCGGACATGTGGGGCGCCACCCCGTATGACCAGCTGCTATGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCGCCGGGTACCGACCTGTCGCTGAGCTTCCCGGGTTCGCTGGGTGGCATGAACTGGGGCAGCATTTCTACCGACCCGGTACATGGCTTCATCTTCGTCAACGACATGCGTCT > NC_002947/4049029‑4049323 | tACCGGTCAAGCCAAGCAACATCCCGAACGAGCCGTACTCCCCAACCCAGCCCAAGTCGGTGGGCATGCCACAGATCGGCGCGCAGACCCTGACCGAATCGGACATGTGGGGCGCCACCCCGTATGACCAGCTGCTATGCCGCATCGAc < 5:46807/149‑1 (MQ=255) gTCAAGCCAAGCAACATCCCGAACGAGCCGTACTCCCCAACCCAGCCCAAGTCGGTGGGCATGCCACAGATCGGCGCGCAGACCCTGACCGAATCGGACATGTGGGGCGCCACCCCGTATGACCAGCTGCTATGCCGCATCGACTTCaa < 3:94789/149‑1 (MQ=255) cAACATCCCGAACGAGCCGTACTCCCCAACCCAGCCCAAGTCGGTGGGCATGCCACAGATCGGCGCGCAGACCCTGACCGAATCGGACATGTGGGGCGCCACCCCGTATGACCAGCTGCTATGCCGCATCTTCTTGAAGTCGATgcggc < 3:60494/149‑3 (MQ=255) ccGAACGAGCCGTACTCCCCAACCCAGCCCAAGTCGGTGGGCATGCCACAGATCGGCGCGCAGACCCTGACCGAATCGGACATGTGGGGCGCCACCCCGTATGACCAGCTGCTATGCCGCATCGACTTCAAGAAGATGCGCTACGACgg > 6:234824/1‑149 (MQ=255) aaCGAGCCGTACTCCCCAACCCAGCCCAAGTCGGTGGGCATGCCACAGATCGGCGCGCAGACCCTGGCCGAATCGGACATGTGGGGCGCCACCCCGTATGACCAGCTGCTATGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCt < 1:84882/149‑1 (MQ=255) aaCGAGCCGTACTCCCCAACCCAGCCCAAGTCGGTGGGCATGCCACAGATCGGCGCGCAGACCCTGACCGAATCGGACATGTGGGGCGCCACCCCGTATGACCAGCTGCTATGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCt > 3:292602/1‑149 (MQ=255) cGAGCCGTACTCCCCAACCCAGCCCAAGTCGGTGGGCATGCCACAGATCGGCGCGCAGACCCTGACCGAATCGGACATGTGGGGCGCCACCCCGTATGACCAGCTGCTATGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGt < 6:68874/149‑1 (MQ=255) gCCGTACTCCCCAACCCAGCCCAAGTCGGTGGGCATGCCACAGATCGGCGCGCAGACCCTGACCGAATCGGACATGTGGGGCGCCACCCCGTATGACCAGCTGCTATGCCGCATCGACTTCaag > 6:302526/1‑124 (MQ=255) gCCGTACTCCCCAACCCAGCCCAAGTCGGTGGGCATGCCACAGATCGGCGCGCAGACCCTGACCGAATCGGACATGTGGGGCGCCACCCCGTATGACCAGCTGCTATGCCGCATCGACTTCaag < 5:302526/124‑1 (MQ=255) ccGTACTCCCCAACCCAGCCCAAGTCGGTGGGCATGCCACAGATCGGCGCGCAGACCCTGCCCGAATCGGACATGTGGGGCGCCACCCCGTATGACCAGCTGCTATTCAGCATAGCCTTCAAGAAGATGCCCTACGACGGACTGAacac > 7:248580/1‑149 (MQ=255) gTACTCCCCAACCCAGCCCAAGTCGGTGGGCATGCCAAAGATCGGCGCGCAGACCCTGACCGAATCGGACATGTGGGGCGCCACCCCGTATGACCAGCTGCTATGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACcg > 3:223631/1‑149 (MQ=255) cccAACCCAGCCCAAGTCGGTGGGCATGCCACAGATCGGCGCGCAGACCCTGACCGAATCGGACATGTGGGGCGCCACCCCGTATGACCAGCTGCTATGCCGCATCGACtt < 8:161374/111‑1 (MQ=255) ccaaaacAGCACTAGTCGGTGGGAATGCCACAGTTAGGCGCGCATACCCTGACCGAATAGTTCATGTGGGGCGACACACGGTATGACCAGCTGCTATGCCGCATCGACTTCAATAAGATGCGCTACGACGGCCTGTACACCGCGCAggg < 8:248580/143‑1 (MQ=255) ccAACCCAGCCCAAGTCGGTGGGCATGCCACAGATCGGCGCGCAGACCCTGACCGAATCGGACATGTGGGGCGCCACCCCGTATGACCAGCTGCTATGCCGCATCTTCTTGAAGTCGATgcgg < 8:96577/123‑2 (MQ=255) ccAACCCAGCCCAAGTCGGTGGGCATGCCACAGATCGGCGCGCAGACCCTGACCGAATCGGACATGTGGGGCGCCACCCCGTATGACCAGCTGCTATGCCGCATCTTCTTGAAGTCGATgcgg > 7:96577/1‑122 (MQ=255) aaCCCAGCCCAAGTCGGTGGGCATGCCACAGATCGGCGCGCAGACCCTGACCTAATCGGACATGTGGGGCGCCACCCCGTATGACCAGCTGCTATGCCTCATCGACTTCAAGAAGATTCGCTACGACGGCCTGTACACCGCGCCGGGTa < 2:25103/149‑1 (MQ=255) ccAGCCCAAGTCGGTGGGCATGCCACAGATCGGCGCGCAGACCCTGACCGAATCGGACATGTGGGGCGCCACCCCGTATGACCAGCTGCTATGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCGCCGGGTACCg < 7:1017/149‑1 (MQ=255) ggTGGGCATGCCACAGATCGGCGCGCAGACCCTGACCGAATCGGACATGTGGGGCGCCACCCCGTATGACCAGCTGCTATGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCGCCGGGTACCGAc < 8:50849/139‑1 (MQ=255) ggTGGGCATGCCACAGATCGGCGCGCAGACCCTGACCGAATCGGACATGTGGGGCGCCACCCCGTATGACCAGCTGCTATGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCGCCGGGTACCGAc > 7:50849/1‑139 (MQ=255) ccACAGATCGGCGCGCAGACCCTGACCGAATCGGACATGTGGGGCGCCACCCCGTATGACCAGCTGCTATGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCGCCGGGTAcc < 6:185812/126‑1 (MQ=255) ccACAGATCGGCGCGCAGACCCTGACCGAATCGGACATGTGGGGCGCCACCCCGTATGACCAGCTGCTATGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCGCCGGGTAcc > 5:185812/1‑126 (MQ=255) cGGCGCGCAGACCCTGACCGAATCGGACATGTGGGGCGCCACCCCGTATGACCAGCTGCTATGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCGCCGGGTACCGACCTGTCGCTGAGCTTCCCGGGtt < 5:198628/143‑1 (MQ=255) cGGCGCGCAGACCCTGACCGAATCGGACATGTGGGGCGCCACCCCGTATGACCAGCTGCTATGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCGCCGGGTACCGACCTGTCGCTGAGCTTCCCGGGtt > 6:198628/1‑143 (MQ=255) ggCGCGCAGACCCTGACCGAATCGGACATGTGGGGCGCCACCCCGTATGACCAGCTGCTATGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCGCCGGGTACCGACCTGTCGCTGAGCTTCCCGGGTTCGCTgg < 4:292602/148‑1 (MQ=255) gcgcgcAGACCCTGACCGAATCGGACATGTGGGGCGCCACCCCGTATGACCAGCTGCTATGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCGCCGGGTACCGACCTGTCGCTGAGCTTCCCGGGTTCGCTGGGt > 8:24255/1‑149 (MQ=255) cgcgcAGACCCTGACCGAATCGGACATGTGGGGCGCCACCCCGTATGACCAGCTGCTATGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCGCCGGGTACCGACCTGTCGCTGAGCTTCCCGGGTTCGATGGGTg > 7:104203/1‑149 (MQ=255) cgcAGACCCTGACCGAATCGGACATGTGGGGCGCCACCCCGTATGACCAGCTGCTATGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCGCCGGGTACCGACCTGTCGCTGAGCTTCCCGGGTTCGCTGGGTGGc < 7:24255/149‑1 (MQ=255) ccTGACCGAATCGGACATGTGGGGCGCCACCCCGTATGACCAGCTGCTATGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCGCCGGGTACCGACCTGTCGCTGAGCTTCCCGGGTTCGCTGGGTGGCATGAACt > 4:296224/1‑149 (MQ=255) ccTGACCGAATCGGACATGTGGGGCGCCACCCCGTATGACCAGCTGCTATGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCGCCGGGTACCGACCTGTCGCTGAGCTTCCCGGGTTCGCTGGGTGGCATGAACt < 5:234824/149‑1 (MQ=255) ccTGACCGAATCGGACATGTGGGGCGCCACCCCGTATGACCAGCTGCTATGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCGCCGGGTACCGACCGGTCGCTGAGCTTCGCGGGTTCGCTGGGTGGCATGAACt > 8:290207/1‑149 (MQ=255) aCCGAATCGGACATGTGGGGCGCCACCCCGTATGACCAGCTGCTATGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCGCCGGGTACCGACCTGTCGCTGAGCTTCCCGGGTTCGCTGGGTGGCATGAACTgggg < 3:280194/149‑1 (MQ=255) aCCGAATCGGACATGTGGGGCGCCACCCCGTATGACCAGCTGCTATGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCGCCGGGTACCAACCTGTCGCTGAGCTTCCCGGGTTCGCTGGGTGGCATGAACTgggg < 4:116140/149‑1 (MQ=255) cGAATCGGACATGTGGGGCGCCACCCCGTATGACCAGCTGCTATGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCGCCGGGTACCg < 5:12281/101‑1 (MQ=255) cGAATCGGACATGTGGGGCGCCACCCCGTATGACCAGCTGCTATGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCGCCGGGTACCg > 6:12281/1‑101 (MQ=255) cGAATCGGACATGTGGGGCGCCACCCCGTATGACCAGCTGCTATGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCGCCGGGTACCGACCTGTCGCTGAGCTTCCCGGGTTCGCTGGGTGGCATGAACTgggg > 5:45917/1‑147 (MQ=255) tCGGACATGTGGGGCGCCACCCCGTATGACCAGCTGCTATGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCGCCGGGTACCGACCTGTCGCTGAGCTTCCCGGGTTCGCTGGGTGGCATGAACTGGGGCAGCAt < 4:140405/149‑1 (MQ=255) tgGGGCGCCACCCCGTATGACCAGCTGCTATGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCGCCGGGTACCGACCTGTCGCTGAGCTTCCCGGGTTCGCTGGGTGGCATGAACTGGGGCAGCATTTCTACCGa > 4:11726/1‑149 (MQ=255) ggggCGCCACCCCGTATGACCAGCTGCTATGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCGCCGGGTACCGACCTGTCGCTGAGCTTCCCGGGTTCGCTGGGTGGCATGAACTGGGGCAGCATTTCTACCGAc > 3:41748/1‑149 (MQ=255) gggCGCCACCCCGTATGACCAGCTGCTATGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCGCCGGGTACCGACCTGTCGCTGAGCTTCCCGGGTTCGCTGGGTGGCATGAACTGGGGCAGCATTTCTACCGAcc > 2:244998/1‑149 (MQ=255) gggCGCCACCCCGTATGACCAGCTGCTATGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCGCCGGGTACCGACCTGTCGCTGAGCTTCCCGGGTTCGCTGGGTGGCATGAACTGGGGCAGCATTTCTACCGAcc < 6:45917/149‑1 (MQ=255) ccACCCCGTATGTCCAGCTGCTATGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCGCCGGGTACCGACCTGTCGCTGAGCTTCCCGGGTTCGCTGGGTGGCATGAACTGGGGCAGCATTTCTACCGACCCGGTa > 5:28193/1‑149 (MQ=255) tGACCAGCTGCTATGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCTCCGGGTACCGACCTGTCGCTGAGCTTCCCGGGTTCGCTGGGTGGCATGAACTGGGGCAGCATTTCTACCGACCCGGTACATGGCTTc < 1:244998/148‑1 (MQ=255) aGCTGCTATGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCGCCGGGTACCGACCTGTCGCTGAGCTTCCCGGGTTCGCTGGGTGGCATGAACTGGGGCAGCATTTCTACCGACCCGGTACATGGCTTCATCTTc < 4:223631/149‑1 (MQ=255) aGCTGCTATGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCGCCGGGTACCGACCTGTCGCTGAGCTTCCCGGGTTCGCTGGGTGGCATGAACTGGGGCAGCATTTCTACCGACCCGGTACATGGCTTCATCTTc > 8:150521/1‑149 (MQ=255) gctgctATGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCGCCGGGTACCGACCTGTCGCTGAGCTTCCCGGGTTCGCTGGGTGGCATGAACTGGGGCAGCATTTCTACCGACCCGGTACATGGCTTCATCTTCg < 7:150521/149‑1 (MQ=255) gctATGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCGCCGGGTACCGACCTGTCGCTGAGCTTCCCGGGTTCGCTGGGTGGCATGAACTGGGGCAGCATTTCTACCGACCCGGTACATGGCTTCATCTTc < 2:45176/145‑1 (MQ=255) gctATGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCGCCGGGTACCGACCTGTCGCTGAGCTTCCCGGGTTCGCTGGGTGGCATGAACTGGGGCAGCATTTCTACCGACCCGGTACATGGCTTCATCTTc > 1:45176/1‑145 (MQ=255) aTGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCGCCGGGTACCGACCTGTCGCTGAGCTTCCCGGGTTCGCTGGGTGGCATGAACTggg < 2:224681/104‑1 (MQ=255) aTGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCGCCGGGTACCGACCTGTCGCTGAGCTTCCCGGGTTCGCTGGGTGGCATGAACTggg > 1:224681/1‑104 (MQ=255) tGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCGCCGGGTACCGACCTGTCGCTGAGCTTCCCGGGTTCGCTGGGTGGCATGAACTGGGGCAGCATTTCTACCGACCCGGTACATGGCTTCATCTTCGTCAACGa < 4:41748/149‑1 (MQ=255) tGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCATGTACACCGCGCCGGGTACCGACCTGTCGCTGAGCTTCCCGGGTTCTCTGTGTGGCATTAACTGGTGCAGCATTTCTACCGACCCGGTACATGGCTTCATCTTCGTCAAc < 7:290207/147‑1 (MQ=255) gcGCATCTTCTTGAAGTCGATGCGCTACGACGGCCTGTACACCGCGCCGGGTACCGACCTGTCGCTGAGCTTCCCGGGTTCGCTGGGTGGCATGAACTGGGGCAGCATTTCTACCGACCCGGTACATGGCTTCATCTTCGTCAACGACa > 5:17526/2‑149 (MQ=255) ccGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCGCCGGGTACCGACCTGTCGCTGAGCTTCCCGGGTTCGCTGGGTGGCATGAACTGGGGCAGCATTTCTACCGACCCGGTACATGGCTTCATCTTCGTCAACGACa > 6:158169/1‑149 (MQ=255) ccGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCGCCGGGTACCGACCTGTCGCTGAGCTTCCCGGGTTCGCTGGGTGGCATGAACTGGGGCAGCATTTCTACCGACCCGGTACATGGCTTCATCTTCGTCAACGACa > 4:219630/1‑149 (MQ=255) cGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCGCCGGGTACCGACCTGTCGCTGAGCTTCCCGGGTTCGCTGGGTGGCATGAACTGGGGCAGCATTTCAACCGACCCGGTACATGGCTTCATCTTCGTCAACGACAt > 5:280085/1‑149 (MQ=255) gACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCGCCGGGTACCGACCTGTCGCTGAGCTTCCCGGGTTCGCTGGGTGGCATGAACTGGGGCAGCATTTCTACCGACCCGGTACATGGCTTCATCTTCGTCAACGACATGCGTc < 6:28193/148‑1 (MQ=255) gACTTCAAGAAGATGCGCTACGACGGACTGTACACCGCGCCGGGTACCGACCTGTCGCTGAGCTTCCCGGGTTCGCTGTGTGGCATGAACTGGGGCAGCATTTCTACCGACCAGGTACATGGCTTCATCTTCGTCAACGACATGCTTCt > 2:55240/1‑149 (MQ=255) | TACCGGTCAAGCCAAGCAACATCCCGAACGAGCCGTACTCCCCAACCCAGCCCAAGTCGGTGGGCATGCCACAGATCGGCGCGCAGACCCTGACCGAATCGGACATGTGGGGCGCCACCCCGTATGACCAGCTGCTATGCCGCATCGACTTCAAGAAGATGCGCTACGACGGCCTGTACACCGCGCCGGGTACCGACCTGTCGCTGAGCTTCCCGGGTTCGCTGGGTGGCATGAACTGGGGCAGCATTTCTACCGACCCGGTACATGGCTTCATCTTCGTCAACGACATGCGTCT > NC_002947/4049029‑4049323 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |