Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 4,267,946 A→T 9.3% intergenic (‑89/+14) galP‑IV ← / ← PP_3740 porin‑like protein/MFS transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029474,267,9460AT 9.3% 142.6 / 4.3 53intergenic (‑89/+14)galP‑IV/PP_3740porin‑like protein/MFS transporter
Reads supporting (aligned to +/- strand):  ref base A (22/26);  new base T (3/2);  total (25/28)
Fisher's exact test for biased strand distribution p-value = 6.58e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CGCCAGCGAAACAGCCAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTAT‑TGTTCTCCACGTTCAATAGGCGCAGCAGACCGCCCCAGGCCAGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGTTACACTCAGTGGCTCAGTGCATCAGCAGGCAAGGCAGACGCAGGCTTGGCCGTTGGGCGCAACAGCAGCAGGCAACCTGCGGCAAGCACGAACACGCTGGCGAACACGCCATACAGATGCAGGGGTTGCCAGCCACCATC  >  NC_002947/4267804‑4268094
                                                                                                                                               |                                                                                                                                                    
cGCCAGCGAAACAGTCAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTAT‑TGTTCTCCACGTTCAATAGGCGCAGCAGACCGCCCCAGGCCAGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCgg                                                                                                                                                <  7:76154/149‑1 (MQ=255)
cGCCAGCGAAACAGCCAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTAT‑TGTTCTCCACGTTCAATAGGCGCAGCAGACCGCCCCAGGCCAGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCgg                                                                                                                                                <  7:131332/149‑1 (MQ=255)
 gCCAGCGAAACAGCCAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTATCTGTTCTCCACGTTAATTTGGCGCAGCAGACCGCCCCAGGCCAGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCgg                                                                                                                                                <  1:250354/149‑1 (MQ=255)
  ccAGCGAACCAGCCACGACCGAAGTGGCCTGCCTGCAAGTTGTGTCCATCATAAATAT‑TGTTCTCCACGTTCACTACGCGCAGCAGACCGCCCCAGGCCAGCACGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGt                                                                                                                                              <  4:210853/149‑1 (MQ=255)
   cAGCGAAACAGCCAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTAT‑TGTTCTCCACGTTCAATAGGCGCAGCAGACCGCCCCAGGCCAGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCTGGCCGGGta                                                                                                                                             >  4:275861/1‑148 (MQ=255)
   cAGCGAAACAGCCAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTAT‑TGTTCTCCACGTTCAATAGGCGCAGCAGACCGCCCCAGGCCAGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGt                                                                                                                                              >  3:189464/1‑148 (MQ=255)
      cGAAACAGCCAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTAT‑TGTTCTCCACGTTCAATAGGCGCAGCAGACCGCCCCAGGCCAGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCTGGCCGGGtatct                                                                                                                                          <  3:275861/149‑5 (MQ=255)
      cGAAACAGCCAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTAT‑TGTTCTCCACGTTCAATAGGCGCAGCAGACCGCCCCAGGCCAGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGTTaca                                                                                                                                          <  7:28647/149‑1 (MQ=255)
      cGAAACAGCCAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTAT‑TGTTCTCCACGTTCAATAGGCGCAGCAGACCGCCCCAGGCCAGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGTTaca                                                                                                                                          <  4:189464/149‑1 (MQ=255)
         aaCAGCCAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTAT‑TGTTCTCCACGTTCAATAGGCGCAGCAGACCGCCCCAGGCCAGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCTGGCCGGGtatctgaa                                                                                                                                       <  5:268348/149‑8 (MQ=255)
             gCCAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTAT‑TGTTCTCCACGTTCAATAGGCGCAGCAGACCGCCCCAGGCCAGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGTTACACTCAGTg                                                                                                                                   >  1:96053/1‑149 (MQ=255)
              ccAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTAT‑TGTTCTCCACGTTCAATAGGCGCAGCAGACCGCCCCAGGCCAGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGTTACACTCAGTgg                                                                                                                                  <  7:229783/149‑1 (MQ=255)
               cAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTAT‑TGTTCTCCACGTTCAATAGGCGCAGCAGACCGCCCCAGGCCAGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGTTACACTCAGt                                                                                                                                    >  4:298522/1‑146 (MQ=255)
               cAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTAT‑TGTTCTCCACGTTCAATAGGCGCAGCAGACCGCCCCAGGCCAGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGTTACACTCAGt                                                                                                                                    <  3:298522/146‑1 (MQ=255)
               cAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTAT‑TGTTCTCCACGTTCAATAGGCGCAGCAGACCGCCCCAGGCCAGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGTTACACTCAGTGGc                                                                                                                                 >  6:267862/1‑149 (MQ=255)
               cAGGACCGAAAGGGCCAGCGTGCAAGTTGTGTCCATCATTATTAT‑TGTTCTCCACGTTCAATAGGCGCAGCAGACCGCCCCAGGCCAGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGTTACACTCAGTGGc                                                                                                                                 <  2:309263/149‑1 (MQ=255)
                              cAGCGTGCAAGTTGTGTCCATCATTATTAT‑TGTTCTCCACGTTCAATAGGCGCAGCAGACCGCCCCAGGCCAGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGTTACACTCAGTGGCTCAGTGCATcagcag                                                                                                                  >  3:217793/1‑149 (MQ=255)
                                     cAAGTTGTGTCCATCATTATTAT‑TGTTCTCCACGTTCAATAGGCGCAGCAGACCGCCCCAGGCCAGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGTTACACTCAGTGGCTCAGTGCATCAGCaggcaagg                                                                                                            >  8:91594/1‑148 (MQ=255)
                                     cAAGTTGTGTCCATCATTATTAT‑TGTTCTCCACGTTCAATAGGCGCAGCAGACCGCCCCAGGCCAGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGTTACACTCAGTGGCTCAGTGCATCAGCaggcaagg                                                                                                            <  5:11039/148‑1 (MQ=255)
                                                catcatTATTAT‑TGTTCTCCACGTTCAATAGGCGCAGCAGACCGCCCCAGGCCAGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGTTACACTCAGTGGCTCAGTGCATCAGCaggc                                                                                                                >  3:83799/1‑133 (MQ=255)
                                                catcatTATTAT‑TGTTCTCCACGTTCAATAGGCGCAGCAGACCGCCCCAGGCCAGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGTTACACTCAGTGGCTCAGTGCATCAGCaggc                                                                                                                <  4:83799/133‑1 (MQ=255)
                                                           t‑tGTTCTCCACGTTCAATAGGCGCAGCAGACCGCCCCAGGCCAGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGTTACACTCAGTGGCTCAGTGCATCAGCAGGCAAGGCAGACGCAGGCTTGGCCGTTggg                                                                                     <  6:124244/149‑1 (MQ=255)
                                                           t‑tGTTCTCCACGTTCAATAGGCGCAGCAGACCGCCCCAGGCCAGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGTTACACTCAGTGGCTCAGTGCATCAGCAGGCAAGGCAGACGCAGGCTTGGCCGTTgg                                                                                      <  3:284019/148‑1 (MQ=255)
                                                                    cACGTTCAATAGGCGCAGCAGACCGCCCCAGGCCAGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGTTACACTCAGTGGCTCAGTGCATCAGCAGGCAAGGCAGACGCa                                                                                                    <  3:207016/126‑1 (MQ=255)
                                                                    cACGTTCAATAGGCGCAGCAGACCGCCCCAGGCCAGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGTTACACTCAGTGGCTCAGTGCATCAGCAGGCAAGGCAGACGCa                                                                                                    >  4:207016/1‑126 (MQ=255)
                                                                    cACGTTCAATAGGCGCAGCAGACCGCCCCAGGCCAGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGTTACACTCAGTGGCTCAGTGCATCAGCAGGCAAGGCAGACGCAGGCTTGGCCGTTGGGCGCAAca                                                                              <  5:267862/148‑1 (MQ=255)
                                                                     aCGTTCAATAGGCGCAGCAGACCGCCCCAGGCCAGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGTTACACTCAGTGGCTCAGTGCATCAGCAGGCAAGGCAGACGCAGGCTTGGCCGTTGGGCGCAAcagc                                                                            <  2:96053/149‑1 (MQ=255)
                                                                          cAATAGGCGCAGCAGACCGCCCCAGGCCAGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGTTACACTCAGTGGCTCAGTGCATCAGCAGGCAAGGCAGACGCAGGCTTGGCCGTTGGGCGCAAcagcagcag                                                                       >  5:203478/1‑149 (MQ=255)
                                                                           aaTAGGCGCAGCAGACCGCCCCAGGCCAGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGTTACACTCAGTGGCTCAGTGCATCAGCAGGCAAGGCAGACGCAGGCTTGGCCGTTGGGCGCAACAGCAGCAgg                                                                      >  4:302794/1‑149 (MQ=255)
                                                                            aTAGGCGCAGCAGACCGCCCCAGGCCAGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGTTACACTCAGTGGCTCAGTGCATCAGCAGGCAAGGCAGACGCAGGCTTGGCCGTTGGGCGCAACAGCAGCAGGc                                                                     <  4:217793/149‑1 (MQ=255)
                                                                               ggCGCAGCAGACCGCCCCAGGCCAGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGTTACACTCAGTGGCTCAGTGCATCAGCAGGCAAGGCAGACGCAGGCTTGGCCGTTggg                                                                                     <  7:153934/130‑1 (MQ=255)
                                                                               ggCGCAGCAGACCGCCCCAGGCCAGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGTTACACTCAGTGGCTCAGTGCATCAGCAGGCAAGGCAGACGCAGGCTTGGCCGTTggg                                                                                     >  8:153934/1‑130 (MQ=255)
                                                                                gcgcAGCAGACCGCCCCAGGCCAGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGTTACACTCAGTGGCTCAGTGCATCAGCAGGCAAGGCAGACGCAGGCTTGGCCGTTGGGCGCAACAGCAGCAGGCAAcc                                                                 >  6:44215/1‑149 (MQ=255)
                                                                                gcgcAGCAGACCGCCCCAGGCCAGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGTTACACTCAGTGGCTCAGTGCATCAGCAGGCAAGGCAGACGCAGGCTTGGCCGTTGGGCGCAACAGCAGCAGGCAAcc                                                                 >  6:11366/1‑149 (MQ=255)
                                                                                   cagcagACCGCCCCAGGCCAGAATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGTTACACTCAGTGGCTCAGTGCATCAGCAGGCAAGGCAGACGCAGGCTTGGCCGTTGGGCGCAACAGCAGCAGGCAACCTGc                                                              >  7:184206/1‑149 (MQ=255)
                                                                                             ccccAGGCCAGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGTTACACTCAGTGGCTCAGTGCATCAGCAGGCAAGGCAGACGCAGGCTTGGCCGTTGGGCGCAACAGCAGCAGGCAACCTGCGGCAAGCACg                                                    <  6:203478/149‑1 (MQ=255)
                                                                                                 aGGCCAGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGTTACACTCAGTGGCTCAGTGCATCAGCAGGCAAGGCAGACGCAGGCTTGGCCGTTGGgcgc                                                                                  >  4:155167/1‑115 (MQ=255)
                                                                                                 aGGCCAGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGTTACACTCAGTGGCTCAGTGCATCAGCAGGCAAGGCAGACGCAGGCTTGGCCGTTGGgcgc                                                                                  <  3:155167/115‑1 (MQ=255)
                                                                                                  ggCCAGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGTTACACTCAGTGGCTCAGTGCATCAGCAGGCAAGGCAGACGCAGGCTTGGCCGTTGGGCGCAACAGCAGCAGGCAACCTGCGGCAAGCACGAacac                                               <  3:302794/149‑1 (MQ=255)
                                                                                                      aGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGTTACACTCAGTGGCTCAGTGCATCAGCAGGCAAGGCAGACGCAGGCTTGGCCGTTGGGCGCAACAGCAGCAGGCAACCTGCGGCAAGCACGAACACGCTg                                           <  8:184206/149‑1 (MQ=255)
                                                                                                         aTGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGTTACACTCAGTGGCTCAGTGCATCAGCAGGCAAGGCAGACGCAGGCTTGGCCGTTGGGCGCAACAGCAGCAGGCAACCTGCGGCAAGCACGAACACGCTGGc                                         >  8:51484/1‑148 (MQ=255)
                                                                                                         aTGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGTTACACTCAGTGGCTCAGTGCATCAGCAGGCAAGGCAGACGCAGGCTTGGCCGTTGGGCGCAACAGCAGCAGGCAACCTGCGGCAAGCACGAACACGCTGGc                                         >  2:150514/1‑148 (MQ=255)
                                                                                                              ccGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGTTACACTCAGTGGCTCAGTGCATCAGCAGGCAAGGCAGACGCAGGCTTGGCCGTTGGGCGCAACAGCAGCAGGCAACCTGCGGCAAGCACGAACACGCTGGCGAacac                                   <  5:44215/149‑1 (MQ=255)
                                                                                                                    cAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGTTACACTCAGTGGCTCAGTGCATCAGCAGGCAAGGCAGACGCAGGCTTGGCCGTTGGGCGCAACAGCAGCAGGCAACCTGCGGCAAGCACGAACACGCTGGCGAACACGCCATa                             >  4:258464/1‑149 (MQ=255)
                                                                                                                     aGTAAGGTGCATTCAGATACCCGGCCAGGCCGGGTTACACTCAGTGGCTCAGTGCATCAGCAGGCAAGGCAGACGCAGGCTTGGCCGTTGGGCGCAACAGCAGCAGGCAACCTGCGGCAAGCACGAACACGCTGGCGAACACGCCATAc                            <  7:91594/149‑1 (MQ=255)
                                                                                                                               aTTCAGATACCCGGCCAGGCCGGGTTACACTCAGTGGCTCAGTGCATCAGCAGGCAAGGCAGACGCAGGCTTGGCCGTTGGGCGCAACAGCAGCAGGCAACCTGCGGCAAGCACGAACACGCTGGCGAACACGCCATACAGATGCAggg                  >  2:79496/1‑149 (MQ=255)
                                                                                                                                ttCAGATACCCGGCCAGGCCGGGTTACACTCAGTGGCTCAGTGCATCAGCAGGCAAGGCAGACGCAGGCTTGGCCGTTGGGCGCAACAGCAGCAGGCAACCTGCGGCAAGCACGAACACGCTGGCGAACACGCCATACAGATGCAgggg                 <  2:46761/149‑1 (MQ=255)
                                                                                                                                ttCAGATACCCGGCCAGGCCGGGTTACACTCAGTGGCTCAGTGCATCAGCAGGCAAGGCAGACGCAGGCTTGGCCGTTGGGCGCAACAGCAGCAGGCAACCTGCGGCAAGCACGAACACGCTGGCGAACACGCCATACAGATGCAgggg                 >  1:46761/1‑149 (MQ=255)
                                                                                                                                 tCAGATACCCGGCCAGGCCGGGTTACACTCAGTGGCTCAGTGCATCAGCAGGCAAGGCAGACGCAGGCTTGGCCGTTGGGCGCAACAGCAGCAGGCAACCTGCGGCAAGCACGAACACGCTGGCGAACACGCCATACAGATGCAGGGGt                >  8:148194/1‑149 (MQ=255)
                                                                                                                                  cAGATACCCGGCCAGGCCGGGTTACACTCAGTGGCTCAGTGCATCAGCAGGCAAGGCAGACGCAGGCTTGGCCGTTGGGCGCaa                                                                                >  2:181087/1‑84 (MQ=255)
                                                                                                                                  cAGATACCCGGCCAGGCCGGGTTACACTCAGTGGCTCAGTGCATCAGCAGGCAAGGCAGACGCAGGCTTGGCCGTTGGGCGCaa                                                                                <  1:181087/84‑1 (MQ=255)
                                                                                                                                   tgtaaCCCGGCCTGGCCGGGTTACACTCAGTGGCTCAGTGCATCAGCAGGCAAGGCAGACGCAGGCTTGGCCGTTGGGCGCAACAGCAGCAGGCAACCTGCGGCAAGCACGAACACGCTGGCGAACACGCCATACAGATGCAGGGGTTg              >  4:10437/5‑149 (MQ=255)
                                                                                                                                     taaCCCGGCCTGGCCGGGTTACACTCAGTGGCTCAGTGCATCAGCAGGCAAGGCAGACGCAGGCTTGGCCGTTGGGCGCAACAGCAGCAGGCAACCTGCGGCAAGCACGAACACGCTGGCGAACACGCCATACAGATGCAGGGGTTgc             >  3:238240/3‑148 (MQ=255)
                                                                                                                                               aGGCCGGGTTACACTCAGTGGCTCAGTGCATCAGCAGGCAAGGCAGACGCAGGCTTGGCCGTTGGGCGCAACAGCAGCAGGCAACCTGCGGCAAGCACGAACACGCTGGCGAACACGCCATACAGATGCAGGGGTTGCCAGCCACCATc  <  5:11366/149‑1 (MQ=255)
                                                                                                                                               |                                                                                                                                                    
CGCCAGCGAAACAGCCAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTAT‑TGTTCTCCACGTTCAATAGGCGCAGCAGACCGCCCCAGGCCAGCATGACCCGGAGCAGTAAGTTGCATTCAGATACCCGGCCAGGCCGGGTTACACTCAGTGGCTCAGTGCATCAGCAGGCAAGGCAGACGCAGGCTTGGCCGTTGGGCGCAACAGCAGCAGGCAACCTGCGGCAAGCACGAACACGCTGGCGAACACGCCATACAGATGCAGGGGTTGCCAGCCACCATC  >  NC_002947/4267804‑4268094

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑