| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,340,090 | A→T | 29.6% | intergenic (+75/‑256) | ribAB‑II → / → PP_3814 | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,340,090 | 0 | A | T | 29.6% | 16.8 / 14.0 | 24 | intergenic (+75/‑256) | ribAB‑II/PP_3814 | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein |
| Reads supporting (aligned to +/- strand): ref base A (7/7); new base T (3/4); total (13/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.75e-02 | |||||||||||
GCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGC‑GGG‑TTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCG‑C‑GGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTGCAGGCCGGCACCTA > NC_002947/4339952‑4340237 | gCTGGCGGGCTATGAGCTGGAGGTGGTGCAGGGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGC‑GGG‑TTTACCCGCGAATGCGTCGGTGGTGTCACCCTCGCATTcg‑c‑g < 2:59974/149‑1 (MQ=25)gCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGC‑GGG‑TTTACCCGCGAATGCGTCGGTGGTGTCACCCTCGCATTcg‑c‑g < 1:300722/149‑1 (MQ=25) cTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGC‑GGG‑TTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCG‑C‑gg < 7:265356/149‑1 (MQ=255) cTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCAGGGCCCTGTAGGAGC‑GGG‑TTTACCCGCGAATGCGTCGGTGGTGTCACCCTCGCATTCG‑C‑gg < 3:13421/149‑1 (MQ=25) tGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGC‑GGG‑TTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCG‑C‑GGGTAAACCCGc < 6:69710/148‑1 (MQ=255) gtgCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGC‑GGG‑TTTACCCGCGAATGCGTCGGTGGTGTCACCCTCGCATTCG‑C‑GGGTAAAc > 8:243084/1‑131 (MQ=21) gtgCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGC‑GGG‑TTTACCCGCGAATGCGTCGGTGGTGTCACCCTCGCATTCG‑C‑GGGTAAAc < 7:243084/131‑1 (MQ=21) gagCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGC‑GGG‑TTTAACCGCGAATGCGAGGGTGACACCACCGACGCATTCG‑C‑GGGTAAACCCG‑ACCTACAGGGCCCTTGGTGc > 3:116686/1‑149 (MQ=255) ggaaTCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACATGCAATTGATTTAGCGGGGCCCTGTAGGAGC‑GGG‑TTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTc < 6:15658/112‑1 (MQ=255) cccGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGC‑GGG‑TTTAACCGCCAATGCGAGGGTGTCACCACCCCCGCCTTAG‑C‑GGGTTAACCCGCAccgaaac > 3:259064/1‑127 (MQ=37) tGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGC‑GGGTTTTAACCCCAAATG‑GAGGGTGGCACCACCGCCGCAATAG‑CGGGGTAAACCC‑CGCCGACAGGGGCCGTGGTGGGTTTGGAAGGGCGGAGTGATGGGCgggggg > 4:274132/1‑145 (MQ=255) acaAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGG‑TTTAACCCCCAATG‑GAGGGGGGCAACACCCACCCAATAGCC‑GGGAAAACCCCCCCAAACAGGCCCCGGGGGGGTTTTGAACGGGGGGGGTGATGGCGGGGGGCCCCaacc > 4:69144/1‑145 (MQ=255) aaTTGATTTAGCGGGGCCCTGTAGGAGC‑GGG‑TTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCG‑C‑GGGTAAACCCGCTCCTACAGGGGCCATGGTGGTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGc > 5:155110/1‑148 (MQ=255) gccccTGTCGGCGC‑GGG‑TTAACCCGCTAAGGCGAGGGGCACACCACCCACGAATTCG‑G‑GGTAAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATa < 3:69144/147‑1 (MQ=255) gTAGGAGC‑GGG‑TTTACCCGCGGATGCGAGGGTGACACCCCCGCCGCATTAG‑C‑GGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCataa > 5:300177/1‑149 (MQ=255) ccccGCTAATGCGAGGGTCAAACAACCCACCCATTCG‑C‑GGTAAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTa < 3:84947/148‑1 (MQ=255) ccGCGAATGCGTCGGTGGTGTCACCCTCGCATTCG‑C‑GGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGa > 6:270046/1‑149 (MQ=25) ccGCGAATGCGTCGGTGGTGTCACCCTCGCATTCG‑C‑GGGTAAACCCGCTCCTAAAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGa > 1:73177/1‑149 (MQ=25) ccGCGAATGCGAGGGTGACACCACCGACGCATTCG‑C‑GGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGa > 5:121525/1‑149 (MQ=255) ccGCGAATGCGAGGGTGACACCACCGACGCATTCG‑C‑GGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGa > 1:280423/1‑149 (MQ=255) gcgAATGCGAGGGTGACACCACCGACGCATTCG‑C‑GGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATAc < 7:113794/103‑1 (MQ=255) gcgAATGCGAGGGTGACACCACCGACGCATTCG‑C‑GGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATAc > 8:113794/1‑103 (MQ=255) accGACGCATTCG‑C‑GGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCATGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTGCAGGCCGGCAc > 5:196383/1‑149 (MQ=255) cGACGCATTCG‑C‑GGGTAAACCCG‑AACTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTGCAGGCCGGCACCTa < 4:116686/149‑1 (MQ=255) aCGCATTCG‑C‑GGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTGCAGGCCGGCACCTa > 4:254848/1‑148 (MQ=255) | GCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGC‑GGG‑TTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCG‑C‑GGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTGCAGGCCGGCACCTA > NC_002947/4339952‑4340237 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |