Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,416,652 | G→T | 6.9% | intergenic (+13/+193) | PP_3903 → / ← PP_3904 | hypothetical protein/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,416,652 | 0 | G | T | 6.9% | 184.7 / 3.4 | 58 | intergenic (+13/+193) | PP_3903/PP_3904 | hypothetical protein/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base G (28/26); new base T (2/2); total (30/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.82e-01 |
GGCTTCGATGTAAAAGGCGCGATGTGCCGGGACGTAGCCGTTGTAGCTGCGGCCTGGGCGATCGGTGAACTGCAGCGCGAGATGCTGAAGACCATCCAGAAGCCCGGCGGCGGAAAAATCAGCGTCGATTAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCATGGCGGCAGATGAATGCCGCGAATAGGAGAAAGGCTATGAGGCGCTTAATTTGTGCTGGTGTCTATTGGCTCATTGAGCATCTTCTTGACCAACTAGACCGCAGAAAAGCAGCTCGC > NC_002947/4416508‑4416798 | ggCTTCGATGTAAAAGGCGCGATGTGCCGGGACGTAGCCGTTGTAGCTGCGGCCTGGGCGATCGGTGAACTGCAGCGCGAGATGCTGAAGACCATCCAGAAGCCCGGCGGCGGAAAAATCAGCGTCGATTAATCAACTGCCCTAGAggg > 2:275674/1‑149 (MQ=255) ggCTTCGATGTAAAAGGCGCGATGTGCCGGGACGTAGCCGTTGTAGCTGCGGCCTGGGCGATCGGTGAACTGCAGCGCGAGATGCTGAAGACCATCCAGAAGCCCGGCGGCGGAAAAATCAGCGTCGATTAATCAACTGCCCTAGAggg < 2:68063/149‑1 (MQ=255) cGATGTAAAAGGCGCGATGTGCCGGGACGTACCCGTTGTAGCTGCGGCCTGGGCGATCGGTGAACTGCAGCGCGAGATGCTGAAGACCATCCAGAAGCCCGGCGGCGGAAAAATCAGCGTCGATTAATCAACTGCCCTCTAGGGCagt < 7:280675/148‑3 (MQ=255) aTGTAAAAGGCGCGATGTGCCGGGACGTAGCCGTTGTAGCTGCGGCCTGGGCGATCGGTGAACTGCAGCGCGAGATGCTGAAGACCATCCAGAAGCCCGGCGGCGGAAAAATCAGCGTCGATTAATCAACTGCCCTAGAGGGCACGCaa > 7:253427/1‑149 (MQ=255) tGTAAAAGGCGCGATGTGCCGGGACGTAGCCGTTGTAGCTGCGGCCTGGGCGATCGGTGAACTGCAGCGCGAGATGCTGAAGACCATCCAGAAGCCCGGCGGCGGAAAAATCAGCGTCGATTAATCAACTGCCCTAGAGGGCACGCAAt < 4:202824/149‑1 (MQ=255) agTAAAAGGCGCGATGTGCCGGGACGTAGCCGATGTAGCTCCGGCCTGGCAGATCCCTGAACAGCAGCGACAGATCCTGAAGACCAACCAGAAGCCCGGCGGCGGAAAAATCAGCGTCGATTAATCAACTGCACTAGACGACACCCAAt > 1:276742/2‑149 (MQ=255) tAAAAGGCGCGATGTGCCGGGACGTAGCCGTTGTAGCTGCGGCCTGGGCGATCGGTGAACTGCAGCGCGAGATGCTGAAGACCATCCAGAAGCCCGGCGGCGGAAAAATCAGCGTCGATTAATCAACTGCCCTAGAGGGCACGCAATg < 7:34685/148‑1 (MQ=255) tAAAAGGCGCGATGTGCCGGGACGTAGCCGTTGTAGCTGCGGCCTGGGCGATCGGTGAACTGCAGCGCGAGATGCTGAAGACCATCCAGAAGCCCGGCGGCGGAAAAATCAGCGTCGATTAATCAACTGCCCTAGAGGGCACGCAATg < 1:275674/148‑1 (MQ=255) tAAAAGGCGCGATGTGCCGGGACGTAGCCGTTGTAGCTGCGGCCTGGGCGATCGGTGAACTGCAGCGCGAGATGCTGAAGACCATCCAGAAGCCCGGCGGCGGAAAAATCAGCGTCGATTAATCAACTGCCCTAGAGGGCACGCAATGt > 6:183164/1‑149 (MQ=255) atagtggcgATGTGCCGGGACGTAGCCGTTGTAGCTGCGGCTTGGGCGATGGGTTAACTGCAGCGCGAGATGCTGAAGACCATCCAGAAGCCCGGCGTCGGAAAATTCAGCGTCGATTAATCAACTGCCCTAGAGGGCACGCAATGTTc < 2:276742/143‑1 (MQ=255) aGGCGCGATGTGCCGGGACGTAGCCGTTGTAGCTGCGGCCTGGGCGATCGGTGAACTGCAGCGCGAGATGCTGAAGACCATCCAGAAGCCCGGCGGCGGAAAAATCAGCGTCGATTAATCAACTGCCCTAGAGGGCACGCAATGTTCaa < 4:157176/149‑1 (MQ=255) aGGCGCGATGTGCCGGGACGTAGCCGTTGTAGCGGCGGCCTGGGCGATCGGTGAACTGCTGCGCGAGATGCTGAAGACCATCCAGAAGCCCGGCGTCGGAAAAATCAGCGTCGATTAATCAACTGCCCTAGAGTTCACGCAATTTTCaa < 4:249295/149‑1 (MQ=255) cgATGTGCCGGGACGTAGCCGTTGTAGCTGCGGCCTGGGCGATCGGTGAACTGCAGCGCGAGATGCTGAAGACCATCCAGAAGCCCGGCGGCGGAAAAATCAGCGTCGATTAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATgg < 3:283046/149‑1 (MQ=255) gATGTGCCGGGACGTAGCCGTTGTAGCTGCGGCCTGGGCGATCGGTGAACTGCAGCGCGAGATGCTGAAGACCATCCAGAAGCCCGGCGGCGGAAAAATCAGCGTCGATTAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATgg > 5:157118/1‑148 (MQ=255) gACGTAGCCGTTGTAGCTGCGGCCTGGGCGATCGGTGAACTGCAGCGCGAGATGCTGAAGACCATCCAGAAGCCCGGCGGCGGAAAAATCAGCGTCGATTAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCATggcg < 7:251508/149‑1 (MQ=255) gACGTAGCCGTTGTAGCTGCGGCCTGGGCGATCGGTGAACTGCAGCGCGAGATGCTGAAGACCATCCAGAAGCCCGGCGGCGGAAAAATCAGCGTCGATTAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCATggcg < 7:271338/149‑1 (MQ=255) aCGTAGCCGTTGTAGCTGCGGCCTGGGCGATCGGTGAACTGCAGCGCGAGATGCTGAAGACCATCCAGAAGCCCGGCGGCGGAAAAATCAGCGTCGATTAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCATggcgg < 8:253427/149‑1 (MQ=255) tAGCCGTTGTAGCTGCGGCCTGGGCGATCGGTGAACTGCAGCGCGAGATGCTGAAGACCATCCAGAAGCCCGGCGGCGGAAAAATCAGCGTCGATTAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCATggcgg > 5:107076/1‑146 (MQ=255) cTGAGGCCTGGGCGATCGGTGAACTGCAGCGCGAGATGCTGAAGACCATCCAGAAGCCCGGCGGCGG‑AAAATCAGCGTCGATTAATCAACTGCCCTCTAGGGCagt < 5:191485/106‑3 (MQ=255) cGGCCTGGGCGATCGGTGAACTGCAGCGCGAGATGCTGAAGACCATCCAGAAGCCCGGCGGCGGAAAAATCAGCGTCGATTAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCATGGCGGCAGATGAATGCCGCGAAt < 4:301740/149‑1 (MQ=255) gATCGGTGAACTGCAGCGCGAGATGCTGAAGACCATCCAGAAGCCCGGCGGCGGAAAAATCAGCGTCGATTAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCATGGCGGCAGATGAATGCCGCGAATAGGAGAAAgg < 2:5877/149‑1 (MQ=255) ggTGAACTGCAGCGCGAGATGCTGAAGACCATCCAGAAGCCCGGCGGCGGAAAAATCAGCGTCGATTAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCATGGCGGCAGATGAATGCCGCGAATAGGAGAAAGGCTAt < 6:157118/149‑1 (MQ=255) gTGAACTGCAGCGCGAGATGCTGAAGACCATCCAGAAGCCCGGCGGCGGAAAAATCAGCGTCGATTAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCATGGCGGCAGATGAATGCCGCGAATAGGAGAAAGGCTAt > 4:146976/1‑148 (MQ=255) gAACTGCAGCGCGAGATGCTGAAGACCATCCAGAAGCCCGGCGGCGGAAAAATCAGCGTCGATTAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCATGGCGGCAGATGAATGCCGCGAATAGGAGAAAGGCTATGAg > 8:35702/1‑149 (MQ=255) aaCTGCAGCGCGAGATGCTGAAGACCATCCAGAAGCCCGGCGGCGGAAAAATCAGCGTCGATTAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCATGGCGGCAGATGAATGCCGCGAATAGGAGAAAGGCTATGAgg > 4:142537/1‑149 (MQ=255) cTGCAGCGCGAGATGCTGAAGACCATCCAGAAGCCCGGCGGCGGAAAAATCAGCGTCGATTAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCATGGCGGCAGATGAATGCCGCGAATAGGAGAAAGGCTATGAGgcg > 6:148387/1‑149 (MQ=255) gaTGCTGAAGACCATCCAGAAGCCCGGCGGCGGAAAAATCAGCGTCGATTAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCATGGCGGCAGATGAATGCCGCGAATAGGAGAAAGGCTATGAGGCGCTTAATTtgtg < 6:107076/149‑1 (MQ=255) cTGAAGACCATCCAGAAGCCCGGCGGCGGAAAAATCAGCGTCGATTAATCAACTGCCCTAGAGGGCACGCAAAGTTCAACATGGCAACCATGGCGGCAGATGAATGCCGCGAATAGGAGAAAGGCTATGAGGCGCTTAATTTGTGCTgg > 7:51466/1‑149 (MQ=255) gAAGACCATCCAGAAGCCCGGCGGCGGAAAAATCAGCGTCGATTAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCATGGCGGCAGATGAATGCCGCGAATAGGAGAAAGGCTATGAGGCGCTTAATTTGTGCTGgtg > 7:91131/1‑149 (MQ=255) aaGACCATCCAGAAGCCCGGCGGCGGAAAAATCAGCGTCGATTAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCATGGCGGCAGATGAATGCCGCGAATAGGAGAAAGGCTATGAGGCGCTTAATTTGTGCTGgt < 6:165550/147‑1 (MQ=255) aCCATCCAGAAGCCCGGCGGCGGAAAAATCAGCGTCGATTAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCATGGCGGCAGATGAATGCCGCGAATAGGAGAAAGGCTATGAGGCGCTTAATTTGTGCTGGTGTCTa > 2:50344/1‑149 (MQ=255) cATCCAGAAGCCCGGCGGCGGAAAAATCAGCGTCGATTAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCATGGCGGCAGATGAATGCCGCGAATAGGAGAAAGGCTTTGAGGCGCTTAATTTGTGCTGGTGTCTAtt > 8:273449/1‑149 (MQ=255) tCCAGAAGCCCGGCGGCGGAAAAATCAGCGTCGATTAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCATGGCGGCAGATGAATGCCGCGAATAGGAGAAAGGCTATGAGGCGCTTAATTTGTGCTGGTGTCTATTgg > 3:129367/1‑149 (MQ=255) cAGAAGCCCGGCGGCGGAAAAATCAGCGTCGATTAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCATGGCGGCAGATGAATGCCGCGAATAGGAGAAAGGCTATGAGGCGCTTAATTTGTGCTGGTGTCTATTGGCt > 4:264530/1‑149 (MQ=255) aGAAGCCCGGCGGCGGAAAAATCAGCGTCGATTAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCATGGCGGCAGATGAATGCCGCGAATAGGAGAAAGGCTATGAGGCGCTTAATTTGTGCTGGTGTCTATTGGCTc < 8:91131/149‑1 (MQ=255) cggcggcggAAAAATCAGCGTCGATTAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCATGGCGGCAGAt > 4:109161/1‑81 (MQ=255) cggcggcggAAAAATCAGCGTCGATTAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCATGGCGGCAGAt < 3:109161/81‑1 (MQ=255) ggcggcggAAAAATCAGCGTCGATTAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCATGGCGGCAGATGAATGCCGCGAATAGGAGAAAGGCTATGAGGCGCTTAATTTGTGCTGGTGTCTATTGGCTCATTGAGCa > 6:18791/1‑149 (MQ=255) ggAAAAATCAGCGTCGATTAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCATGGCGGCAGATGAATGCCGCGAATAGGAGAAAGGCTATGAGGCGCTTAATTTGTGCTGGTGTCTATTGGCTCATTGAg > 4:257076/1‑141 (MQ=255) ggAAAAATCAGCGTCGATTAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCATGGCGGCAGATGAATGCCGCGAATAGGAGAAAGGCTATGAGGCGCTTAATTTGTGCTGGTGTCTATTGGCTCATTGAg < 3:257076/141‑1 (MQ=255) gAAAAATCAGCGTCGATTAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCATGGCGGCAGATGAATGCCGCGAATAGGAGAAAGGCTATGAGGCGCTTAATTTGTGCTGGTGTCTATTGGCTCATTGAGCATcttctt > 4:202238/1‑149 (MQ=255) aaaaaTCAGCGGCGATTAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCATGGCGGCAGATGAATGCCGCGAATAGGAGAAAGGCTATGAGGCGCTTAATTTGTGCTGGTGTCTATTGGCTCATTGAGCATCTTCTTg < 6:274884/149‑1 (MQ=255) aaaaTCAGCGTCGATTAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCATGGCGGCAGATGAATGCCGCGAATAGGAGAAAGGCTATGAGGCGCTTAATTTGTGCTGGTGTCTATTGGCTCATTGAGCATCTTCTTGa > 5:205944/1‑149 (MQ=255) aTCAGCGTCGATTAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCATGGCGGCAGATGAATGCCGCGAATAGGAGAAAGGCTATGAGGCGCTTAATTTGTGCTGGTGTCTATTGGCTCATTGAGCATCTTCTTGACCa < 7:35702/149‑1 (MQ=255) aGCGTCGATTAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCATGGCGGCAGATGAATGCCGCGAATAGGAGAAAGGCTATGAGGCGCTTAATTTGTGCTGGTGTCTATTGGCTCATTGAGCATCTTCTTGACCAAc < 3:142537/148‑1 (MQ=255) gCGTCGATTAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCATGGCGGCAGATGAATGCCGCGAATAGGAGAAAGGCTATGAGGCGCTTAATTTGTGCTGGTGTCTATTGGCTCATTGAGCATCTTCTTGACCAACTa < 6:30529/149‑1 (MQ=255) gTCGATTAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCATGGCGGCAGATGAATGCCGCGAATAGGAGAAAGGCTATGAGGCGCTTAATTTGTGCTGGTGTCTATTGGCTCAtt > 8:232658/1‑126 (MQ=255) gTCGATTAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCATGGCGGCAGATGAATGCCGCGAATAGGAGAAAGGCTATGAGGCGCTTAATTTGTGCTGGTGTCTATTGGCTCAtt < 7:232658/126‑1 (MQ=255) tCGATTAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCATGGCGGCAGATGAATGCCGCGAATATGAGAAAGGCTATGAGGCGCTTAATTTGTGCTGGTGTCCATTGGCTCATTGAGCATCTTCTTGACCAACTAGAc > 3:216340/1‑149 (MQ=255) gATTAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCCTGGCGGCAGCTGAATGCCGCGAATAGGAGAAAGGCTATGAGGCGCTTAATTTGTGCTGGGGTCTATTGGCTAATTGAGCATCTTCTTGACCAACTATAcac > 4:36158/1‑147 (MQ=255) aTTAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCATGGCGGCAGATGAATGCCGCGAATAGGAGAAAGGCTATGAGGCGCTTAATTTGTGCTGGTGTCTATTGGCTCATTGAGCATCTTCTTGACCAACTAGACCg > 4:126851/1‑148 (MQ=255) ttAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCATGGCGGCAGATGAATGCCGCGAATAGGAGAAAGGCTATGAGGCGCTTAATTTGTGCTGGTGTCTATTGGCTCATTGAGCATCTTCTTGACCAACTAGACCGCa < 4:129367/149‑1 (MQ=255) aaTCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCATGGCGGCAGATGAATGCCGCGAATAGGAGAAAGGCTATGAGGCGCTTAATTTGTGCTGGTGTCTATTGGCTCATTGAGCATCTTCTTGa > 7:80310/1‑133 (MQ=255) aaTCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCATGGCGGCAGATGAATGCCGCGAATAGGAGAAAGGCTATGAGGCGCTTAATTTGTGCTGGTGTCTATTGGCTCATTGAGCATCTTCTTGa < 8:80310/133‑1 (MQ=255) attgcgtGCCCTCTAGGGCACGCAATGTTCAACATGGCAACCATGGCGGCAGATGAATGCCGCGAATAGGAGAAAGGCTATGAGGCGCTTAATTTGTGCTGGTGTCTATTGGCTCATTGAGCATCTTCTTGACCAACTAGACCGCAGa > 3:294007/7‑148 (MQ=255) tgcgtGCCCTCTAGGGCACGCAATGTTCAACATGGCAACCATGGCGGCAGATGAATGCCGCGAATAGGAGAAAGGCTATGAGGCGCTTAATTTGTGCTGGTGTCTATTGGCTCATTGAGCATCTTCTTGACCAACTAGACCGCAGaa > 7:142230/5‑147 (MQ=255) ccTAGAGGGCACGCAATGTTCAACATGGCAACCATGGCGGCAGATGAATGCCGCGAATAGGAGAAAGGCTATGAGGCGCTTAATTTGTGCTGGTGTCTATTGGCTCATTGAGCATCTTCTTGACCAACTAGACCGCAGAAAAGCAGCTc > 7:229142/1‑149 (MQ=255) tAGAGGGCACGCAATGTTCAACATGGCAACCATGGCGGCAGATGAATGCCGCGAATAGGAGAAAGGCTATGAGGCGCTTAATTTGTGCTGGTGTCTATTGGCTCATTGAGCATCTTCTTGACCAACTAGACCGCAGAAAAGCAGCTcgc > 3:71996/1‑149 (MQ=255) | GGCTTCGATGTAAAAGGCGCGATGTGCCGGGACGTAGCCGTTGTAGCTGCGGCCTGGGCGATCGGTGAACTGCAGCGCGAGATGCTGAAGACCATCCAGAAGCCCGGCGGCGGAAAAATCAGCGTCGATTAATCAACTGCCCTAGAGGGCACGCAATGTTCAACATGGCAACCATGGCGGCAGATGAATGCCGCGAATAGGAGAAAGGCTATGAGGCGCTTAATTTGTGCTGGTGTCTATTGGCTCATTGAGCATCTTCTTGACCAACTAGACCGCAGAAAAGCAGCTCGC > NC_002947/4416508‑4416798 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |