Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,479,114 | A→T | 8.9% | K155N (AAA→AAT) | ybdR → | Zn‑dependent oxidoreductase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,479,114 | 0 | A | T | 8.9% | 159.4 / 4.1 | 55 | K155N (AAA→AAT) | ybdR | Zn‑dependent oxidoreductase |
Reads supporting (aligned to +/- strand): ref base A (23/27); new base T (3/2); total (26/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.59e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 |
CCACCAATACCGGGCGCGGATCGATCATCAACAAAAAGGGCATACCACCAGGCGCAGCGCTGTTCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAG‑CTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGTTGAGTGCCGCC > NC_002947/4478966‑4479261 | ccaccaATACCGGGCGCGGATCGATCATCAACAAAAAGGGCATACCACCAGGCGCAGCGCTGTTCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAG‑CTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCaaa < 3:193974/149‑1 (MQ=255) accaATACCGGGCGCGGATCGATCATCAACAAAAAGGGCATACCACCAGGCGCAGCGCTGTTCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAG‑CTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAATGt > 6:167520/1‑149 (MQ=255) ggCGCGGATCGATCATCAACAAAAAGGGCATACCACCAGGCGCAGCGCTGTTCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAGCCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGACTTTGAATGGCCcgacatt < 1:83769/149‑4 (MQ=255) atcaACAAAAAGGGCATACCACCAGGCGCAGCGCTGTTCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAG‑CTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACa < 4:103073/148‑1 (MQ=255) tcaACAAAAAGGGCATACCACCAGGCGCAGCGCTGTTCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAG‑CTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACa > 2:20374/1‑147 (MQ=255) acaaAAAGGGCATACCACCAGGCGCAGCGCTGTTCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAG‑CTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTg > 5:141919/1‑149 (MQ=255) aGGGCATACCACCAGGCGCAGCGCTGTGCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAG‑CTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTc < 5:199155/149‑1 (MQ=255) aTACCACCAGGCGCAGCGCTGTTCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAG‑CTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATc < 5:54109/149‑1 (MQ=255) tACCACCAGGCGCAGCGCTGTTCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAG‑CTGATTACGTTAGGGTGGCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATcc < 7:291030/149‑1 (MQ=255) tACCACCAGGCGCAGCGCTGTTCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAG‑CTGATTACGTTAGGGTGGCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATcc < 4:72512/149‑1 (MQ=255) tACCACCAGGCGCAGCGCTGTTCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAG‑CTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCcga < 5:2003/114‑1 (MQ=255) tACCACCAGGCGCAGCGCTGTTCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAG‑CTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCcga > 6:2003/1‑114 (MQ=255) accaccAGGCGCAGCGCTGTTCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAG‑CTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATcc > 4:4177/1‑148 (MQ=255) ccaccaGGCGCAGCGCTGTTCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAG‑CTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGa < 6:3735/149‑1 (MQ=255) caccaGGCGCAGCGCTGTTCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAG‑CTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGa > 7:68119/1‑148 (MQ=255) caccaGGCGCAGCGCTGTTCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAG‑CTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGa > 1:5894/1‑148 (MQ=255) gTTCGGATACAGCCATCTGTATGGAGGGATCACTGGAGGCCACG‑CTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAATTCACGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCATTCCCACCGCtt > 5:308975/1‑149 (MQ=255) ttCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGACAAG‑CTGATTACGTTAGGGTGCACAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCtt < 5:169197/148‑1 (MQ=255) aTACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAG‑CTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAg < 8:68119/149‑1 (MQ=255) aGCCATCTGTATGGAGGGATCCCTGGAGGCCAAG‑CTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGt > 6:175129/1‑149 (MQ=255) gCCATCTGTATGGAGGGATCCCTGGAGGCCAAG‑CTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGtc < 5:175129/149‑1 (MQ=255) ccATCTGTATGGAGGGATCCCTGGAGGCCAAG‑CTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTg > 7:288755/1‑138 (MQ=255) ccATCTGTATGGAGGGATCCCTGGAGGCCAAG‑CTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTg < 8:288755/138‑1 (MQ=255) aTCTGTATGGAGGGATCCCTGGAGGCCAAG‑CTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGtcatc < 2:5894/149‑1 (MQ=255) tATGGAGGGATCCCTGGAGGCCAAG‑CTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAATGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGCCAAGCGGtgggaa < 5:167520/145‑6 (MQ=255) tGGAGGGATCCCTGGAGGCCAAG‑CTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCg > 6:184253/1‑136 (MQ=255) tGGAGGGATCCCTGGAGGCCAAG‑CTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCg < 5:184253/136‑1 (MQ=255) gATCCCTGGAGGCCAAG‑CTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTg < 2:4004/149‑1 (MQ=255) ccTGGAGGCCAAG‑CTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCg > 5:136776/1‑148 (MQ=255) ggCCAAG‑CTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTc < 8:109266/149‑1 (MQ=255) gCCAAG‑CTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACTTCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCa > 1:252930/1‑149 (MQ=255) cAAG‑CTGATTACGTTAGGGTGCACAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATc > 7:193143/1‑149 (MQ=255) aaG‑CTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAg < 3:89745/141‑1 (MQ=255) aaG‑CTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAg > 4:89745/1‑141 (MQ=255) aaG‑CTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCg > 6:278122/1‑149 (MQ=255) cTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTa < 6:141919/149‑1 (MQ=255) gATTACGTTAGGGTGCCCAAAGGCAATGTCGGTCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGAc < 1:190243/87‑1 (MQ=255) gATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGAc > 2:190243/1‑87 (MQ=255) aTTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGc > 5:105774/1‑148 (MQ=255) ttACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGa < 3:4177/149‑1 (MQ=255) gTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGaa < 5:22676/129‑1 (MQ=255) gTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGaa < 5:27229/129‑1 (MQ=255) gTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGaa > 6:27229/1‑129 (MQ=255) gTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGaa > 6:22676/1‑129 (MQ=255) gTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTa > 8:113320/1‑149 (MQ=255) ttAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTAt < 2:252930/149‑1 (MQ=255) aGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATg < 3:12505/148‑1 (MQ=255) ggTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTGATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGgcg > 7:266424/1‑149 (MQ=255) cAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGc > 6:196064/1‑149 (MQ=255) cAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTgg < 6:105774/149‑1 (MQ=255) aTGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCTCCGCTTGGCAAGCGGTGATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTgggg < 8:266424/149‑1 (MQ=255) aTGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTgggg < 6:136776/149‑1 (MQ=255) gTCGGGACTTTGAATGGCCCGACGACACTCGAGGATGAAAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCTCGGGGCCAGTGGGGCt > 8:291900/1‑149 (MQ=255) tCGGGACTTTGAATGGCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTg > 7:229240/1‑149 (MQ=255) ttCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGtt > 5:287289/1‑143 (MQ=255) ttCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGtt < 6:287289/143‑1 (MQ=255) aaaGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGTTGAGTgccgc > 7:222430/1‑149 (MQ=255) aaaGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGTTGAGTgccgc > 2:108782/1‑149 (MQ=255) aaaGTCCCGACGACCCTCGCGGATGACAAAGTGCTGATCCTATCCGACATCCTTCCCACCGCTAGGCAAGCGGTCATCAATGACGAGAATGGCGAAGGCTCATCGTTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGTTGAGTgccgc > 4:72474/1‑149 (MQ=255) aaGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGTTGAGTgccgcc > 7:102723/1‑149 (MQ=255) | CCACCAATACCGGGCGCGGATCGATCATCAACAAAAAGGGCATACCACCAGGCGCAGCGCTGTTCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAG‑CTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGTTGAGTGCCGCC > NC_002947/4478966‑4479261 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |