Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 4,554,258 G→T 7.7% S223* (TCG→TAG)  PP_4041 ← glycoside hydrolase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029474,554,2580GT 7.7% 161.3 / 2.5 52S223* (TCG→TAG) PP_4041glycoside hydrolase
Reads supporting (aligned to +/- strand):  ref base G (23/25);  new base T (2/2);  total (25/27)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CAGCAGGGTCATGGTCGCGTCGCGCAGCCAGCAGAAGCGGTAGTCCCAGTTGCGCTCGCCGCCCACACGCTCGGGCAGCGACGTGGTGACGGCAGCGACAATACCGCCGGTGGGAGCGTAGGTCATGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCGGCGAAGGCCTGCCATTGCTCGCAAGTGTTTGCCAGGGCTTGGTCGATGTTGCAGTCAGGCTGCACCGGCAAGTGCGAGGGCTGGTGACGCAGG  >  NC_002947/4554113‑4554398
                                                                                                                                                  |                                                                                                                                             
cagcagGGTCATGGTCGCGTCGCGCAGCCAGCAGAAGCGGTAGTCCCAGTTGCGCTCGCCGCCCACACGCTCGGGCAGCGACGTGGTGACGGCAGCGACAATACCGCCGGTGGGAGCGTAGGTCATGGCCTTGAGGGTGAGCagcgagc                                                                                                                                            >  1:273952/1‑149 (MQ=255)
cagcagGGTCATGGTCGCGTCGCGCAGCCAGCAGAAGCGGTAGTCCCAGTTGCGCTCGCCGCCCACACGCTCGGGCAGCGACGTGGTGACGGCAGCGACAATACCGCCGGTGGGAGCGTAGGTCATGGCCTTGAGGGTGAGCagcgagc                                                                                                                                            >  3:153999/1‑149 (MQ=255)
             gtcgcgtcgcGCAGCCAGCAGAAGCGGTAGTCCCAGTTGCGCTCGCCGCCCACACGCTCGGGCAGCGACGTGGTGACGGCAGCGACAATACCGCCGGTGGGAGCGTAGGTCATGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGc                                                                                                                              >  8:181584/1‑149 (MQ=255)
                  gtcgcgCAGCCAGCAGAAGCGGTAGTCCCAGTTGCGCTCGCCGCCCACACGCTCGGGCTGCGACGTGGTGACGGCAGCGACAATACCGCCGGTGGGAGCGTAGGTCATGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGtat                                                                                                                         <  4:248197/149‑1 (MQ=255)
                  gtcgcgCAGCCAGCAGAAGCGGTAGTCCCAGTTGCGCTCGCCGCCCACACGCTCGGGCAGCGACGTGGTGACGGCAGCGACAATACCGCCGGTGGGAGCGTAGGTCATGGCCTTGAGGGTGAGCAGCGAGCGGCGCTCCAGGGCGGta                                                                                                                          >  7:139908/1‑148 (MQ=255)
                  gtcgcgCAGCCAGCAGAAGCGGTAGTCCCAGTTGCGCTCGCCGCCCACACGCTCGGGCAGCGACGTGGTGACGGCAGCGACAATACCGCCGGTGGGAGCGTAGGTCATGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGtat                                                                                                                         <  8:66731/149‑1 (MQ=255)
                     gcgcAGCCAGCAGAAGCGGTAGTCCCAGTTGCGCTCGCCGCCCACACGCTCGGGCAGCGACGTGGTGACGGCAGCGACAATACCGCCGGTGGGAGCGTAGGTCATGGCCTTGAGGGTGCGCCGCTCGCTGCTCAccctcaag                                                                                                                              >  4:173585/1‑136 (MQ=255)
                     gcgcAGCCAGCAGAAGCGGTAGTCCCAGTTGCGCTCGCCGCCCACACGCTCGGGCAGCGACGTGGTGACGGCAGCGACAATACCGCCGGTGGGAGCGTAGGTCATGGCCTTGAGGGTGCGCCGCTCGCTGCTCAccctcaag                                                                                                                              <  3:173585/142‑7 (MQ=255)
                        cagccagcAGAAGCGGTAGTCCCAGTTGCGCTCGCCGCCCACACGCTCGGGCAGCGACGTGGTGACGGCAGCGACAATACCGCCGGTGGGAGCGTAGGTCATGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTc                                                                                                                   <  4:210408/149‑1 (MQ=255)
                        cagccagcAGAAGCGGTAGTCCCAGTTGCGCTCGCCGCCCACACGCTCGGGCAGCGACGTGGTGACGGCAGCGACAATACCGCCGGTGGGAGCGTAGGTCATGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTc                                                                                                                   <  4:206458/149‑1 (MQ=255)
                            cagcagAAGCGGTAGTCCCAGTTGCGCTCGCCGCCCACACGCTCGGGCAGCGACGTGGTGACGGCAGCGACAATACCGCCGGTGGGAGCGTAGGTCATGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTAc                                                                                                               >  6:310922/1‑149 (MQ=255)
                               cagAAGCGGTAGTCCCAGTTGCGCTCGCCGCCCACACGCTCGGGCAGCGACGTGGTGACGGCAGCGACAATACCGCCGGTGGGAGCGTAGGTCATGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTACCTg                                                                                                            >  5:17891/1‑149 (MQ=255)
                                   aGCGGTAGTCCCAGTTGCGCTCGCCGCCCACACGCTCGGGCAGCGACGTGGTGACGGCAGCGACAATACCGCCGGTGGGAGCGTAGGTCATGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCggg                                                                                                        <  7:181584/149‑1 (MQ=255)
                                             ccAGTTGCGCTCGCCGCCCACACGCTCGGGCAGCGACGTGGTGACGGCAGCGACAATACCGCCGGTGGGAGCGTAGGTCATGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCgg                                                                                              >  3:101834/1‑149 (MQ=255)
                                             ccAGTTGCGCTCGCCGCCCACACGCTCGGGCAGCGACGTGGTGACGGCAGCGACAATACCGCCGGTGGGAGCGTAGGTCATGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCgg                                                                                              >  3:127390/1‑149 (MQ=255)
                                             ccAGTTGCGCTCGCCGCCCACACGCTCGGGCAGCGACGTGGTGACGGCAGCGACAATACCGCCGGTGGGAGCGTAGGTCATGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCgg                                                                                              >  7:87745/1‑149 (MQ=255)
                                               aGTTGCGCTCGCCGCCCACACGCTCGGGCAGCGACGTGGTGACGGCAGCGACAATACCGCCGGTGGGAGCGTAGGTCATGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCGGc                                                                                             >  4:122482/1‑148 (MQ=255)
                                                   gcgcTCGCCGCCCACACGCTCGGGCAGCGACGTGGTGACGGCAGCGACAATACCGCCGGTGGGAGCGTAGGTCATGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCGGCGAAgg                                                                                        >  2:182139/1‑149 (MQ=255)
                                                      gtCGCCGGCCACCCGCTCGGGCAGCGACGTGGTGACCGCAGCGACAATTCCGCCGGCGGGCTCGTAGGTCATTGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCTGTCGGCGAAGGCCt                                                                                     <  4:37980/148‑1 (MQ=255)
                                                            gccCACACGCTCGGGCAGCGACGTGGTGACGGCAGCGACAATACCGCCGGTGGGAGCGTAGGTCATGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCGGCGAAGGCCTGCCAtt                                                                               <  4:252688/149‑1 (MQ=255)
                                                                acacGCTCGGGCAGCGACGTGGTGACGGCAGCGACAATACCGCCGGTGGGAGCGTAGGTCATGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCGGCGAAGGCCTGCCATTGCTc                                                                           <  6:259318/149‑1 (MQ=255)
                                                                acacGCTCGGGCAGCGACGTGGTGACGGCAGCGACAATACCGCCGGTGGGAGCGTAGGTCATGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCGGCGAAGGCCTGCCATTGCTc                                                                           <  4:50063/149‑1 (MQ=255)
                                                                          gCAGCGACGTGGTGACGGCAGCGACAATACCGCCGGTGGGAGCGTAGGTCATGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCGGCGAAGGCCTGCCATTGCTCGCAAGTGttt                                                                 <  2:273952/149‑1 (MQ=255)
                                                                               gACGTGGTGACGGCAGCGACAATACCGGCCGGTGGGAGCGTAGGTCATGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTAc                                                                                                               >  1:160905/1‑99 (MQ=255)
                                                                                  gtggtgACGGCAGCGACAATACCGCCGGTGGGAGCGTAGGTCATGGCCTTGAGGGTGAGCAGCTAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCGGCGAAGGCCTGCCATTGCTCGCAAGTGTTTGCCAGGGc                                                         >  6:144247/1‑149 (MQ=255)
                                                                                   tggtgACGGCAGCGACAATACCGCCGGTGGGAGCGTAGGTCATGGCCTTGAGGGTGAGCAGAGAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCGGCGAAGGCCTGCCATTGCTCGCAAGTCTTTGCCAGGGCt                                                        >  2:242289/1‑149 (MQ=255)
                                                                                        aCGGCAGCGACAATACCGCCGGTGGGAGCGTAGGTCATGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCGGCGAAGGCCTGCCATTGCTCGCAAGTGTTTGCCAGGGCTTGGt                                                    <  1:182139/148‑1 (MQ=255)
                                                                                        aCGGCAGCGACAATACCGCCGGTGGGAGCGTAGGTCATGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCGGCGAAGGCCTGCCATTGCTCGCAAGTGTTTGCCAGGGCTTGGt                                                    <  4:101834/148‑1 (MQ=255)
                                                                                        aCGGCAGCGACAATACCGCCGGTGGGAGCGTAGGTCATGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCGGCGAAGGCCTGCCATTGCTCGCAAGTGTTTGCCAGGGCTTGGt                                                    <  3:175612/148‑1 (MQ=255)
                                                                                          ggCAGCGACAATACCGCCGGTGGGAGCGTAGGTCATGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCGGCGAAGGCCTGCCATTGCTCGCAAGTGTTTGCCAGGGCTTGGTCGa                                                 >  3:70686/1‑149 (MQ=255)
                                                                                          ggCAGCGACAATACCGCCGGTGGGAGCGTAGGTCATGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCGGCGAAGGCCTGCCATTGCTCGCAAGTGTTTGCCAGGGCTTGGTCGa                                                 >  3:198419/1‑149 (MQ=255)
                                                                                           gCAGCGACAATACCGCCGGTGGGAGCGTAGGTCATGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCGGCGAAGGCCTGCCATTGCTCGCAAGTGTTTGCCAGGGCTTGGTCGAt                                                <  3:122482/149‑1 (MQ=255)
                                                                                               cGACAATACCGCCGGTGGGAGCGTAGGTCATGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCGGCGAAGGCCTGCCATTGCTCGCAAGTGTTTGCCAGGGCTTGGTCGATGTTg                                            >  8:180181/1‑149 (MQ=255)
                                                                                                        cgccgGTGGGAGCGTAGGTCATGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCGGCGAAGGCCTGCCATTGCTCGCAAGTGTTTGCCAGGGCTTGGTCGATg                                               >  8:279196/1‑137 (MQ=255)
                                                                                                        cgccgGTGGGAGCGTAGGTCATGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCGGCGAAGGCCTGCCATTGCTCGCAAGTGTTTGCCAGGGCTTGGTCGATg                                               <  7:279196/137‑1 (MQ=255)
                                                                                                        cgccgGTGGGAGCGTAGGTCATGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCGGCGAAGGCCTGCCATTGCTCGCAAGTGTTTGCCAGGGCTTGGTCGATGTTGCAGTCAGGc                                   <  5:310922/149‑1 (MQ=255)
                                                                                                        cgccgGTGGGAGAGTAGGTCATGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCGGCGAAGGCCTGCCATTGCTCGCAAGTGTTTGCCAGGGCTTGGTCGATGTTGCAGTCAGGc                                   >  2:77784/1‑149 (MQ=255)
                                                                                                           ccgGTGGGAGCGTAGGTCATGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTc                                                                                                                   >  4:245198/1‑67 (MQ=255)
                                                                                                           ccgGTGGGAGCGTAGGTCATGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTc                                                                                                                   <  3:245198/67‑1 (MQ=255)
                                                                                                            aggTGGGAGCGTAGGTCATGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCGGCGAAGGCCTGCCATTGCTCGCAAGTGTTTGCCAGGGCTTGGTCGATGTTGCAGTCAGGCTGc                                <  4:103731/148‑1 (MQ=255)
                                                                                                                 ggAGCGTAGGTCATGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCGGCGAAGGCCTGCCATTGCTCGCAAGTGTTTGCCAGGGCTTGGTCGATGTTGCAGTCAGGCTGCACCg                            <  1:304423/148‑1 (MQ=255)
                                                                                                                       tAGGTCATGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCGGCGAAGGCCTGCCATTGCTCGCAAGTGTTTGCCAGGGCTTGGTCGATGTTGCAGTCAGGCTGCACCGGCAAGTg                     <  1:77784/149‑1 (MQ=255)
                                                                                                                        aGGTCATGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCGGCGAAGGCCTGCCATTGCTCGCAAGTGTTTGCCAGGGCTTGGTCGATGTTGCAGTCAGGCTGCACCGGCAAGTGc                    >  8:67106/1‑149 (MQ=255)
                                                                                                                          gTCATGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCGAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCGGCGAAGGCCTGCCATTGCTCGCAAGTGTTTGCCAGGGCTTGGTCGATGTTGCAGTCAGGCTGCACCGGCAAGTGc                    >  1:49688/1‑148 (MQ=255)
                                                                                                                            cATGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCGGCGAAGGCCTGCCATTGCTCGCAAGTGTTTGCCAGGGCTTGGTCGATGTTGCAGTCAGGCTGCACCGGCAAGCGCGAgg                >  6:238229/1‑149 (MQ=255)
                                                                                                                             aTGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCGGCGAAGGCCTGCCATTGCTCGCAAGTGTTTGCCAGGGCTTGGTCGATGTTGCAGTCAGGCTGCACCGGCAAGTGCGAggg               >  8:205119/1‑149 (MQ=255)
                                                                                                                             aTGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCGGCGAAGGCCTGCCATTGCTCGCAAGTGTTTGCCAGGGCTTGGTCGATGTTGCAGTCAGGCTGCACCGGCAAGTGCGAgg                <  6:17891/148‑1 (MQ=255)
                                                                                                                             aTGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCGGCGAAGGCCTGCCATTGCTCGCAAGTGTTTGCCAGGGCTTGGTCGATGTTGCAGTCAGGCTGCACCGGCAAGTGCGAgg                <  4:70686/148‑1 (MQ=255)
                                                                                                                                 ccTTGAGGGTGAGCAGCTAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCGGCGAAGGCCTGCCATTGCTCGCAAGTGTTTGCCAGGGCTTGGTCGATGTTGCAGTCAGGCTGCACCGGCAAGTGCGAGGGCTgg           <  5:144247/149‑1 (MQ=255)
                                                                                                                                  cTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCGGCGAAGGCCTGCCATTGCTCGCAAGTGTTTGCCAGGGCTTGGTCGATGTTGCAGTCAGGCTGCACCGGCAAGTGCGAGGGCTGGt          <  4:153999/149‑1 (MQ=255)
                                                                                                                                   ttGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCGGCGAAGGCCTGCCATTGCTCGCAAGTGTTTGCCAGGGCTTGGTCGATGTTGCAGTCAGGCTGCACCGGCAAGTGCGAg                 >  2:96968/1‑141 (MQ=255)
                                                                                                                                   ttGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCGGCGAAGGCCTGCCAATGCTCGCAAGTGTTTGCCAGGGCTTGGTCGATGTTGCAGTCAGGCTGCACCGGCAAGTGCGAGGGCTGGt          >  1:96609/1‑148 (MQ=255)
                                                                                                                                   ttGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCGCCGAAGGCCTGCCATTGCTCGCAAGTGTTTGCCAGGGCTTGGTCGATGTTGCAGTCAGGCTGCACCGGCAAGTGCGAg                 <  1:96968/141‑1 (MQ=255)
                                                                                                                                          tGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCGGCGAAGGCCTGCCATTGCTCGCAAGTGTTTGCCAGGGCTTGGTCGATGTTGCAGTCAGGCTGCACCGGCAAGTGCGAGGGCTGGTGACGCAgg  <  2:49688/149‑1 (MQ=255)
                                                                                                                                               agcgagcgGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCGGCGAAGGCCTGCCATTGCTCGCAAGTGTTTGCCAGGGCTTGGTCGATGTTGCAGTCAg                                     <  7:184720/109‑1 (MQ=255)
                                                                                                                                               agcgagcgGCGAACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCGGCGAAGGCCTGCCATTGCTCGCAAGTGTTTGCCAGGGCTTGGTCGATGTTGCAGTCAg                                     >  8:184720/1‑109 (MQ=255)
                                                                                                                                                  |                                                                                                                                             
CAGCAGGGTCATGGTCGCGTCGCGCAGCCAGCAGAAGCGGTAGTCCCAGTTGCGCTCGCCGCCCACACGCTCGGGCAGCGACGTGGTGACGGCAGCGACAATACCGCCGGTGGGAGCGTAGGTCATGGCCTTGAGGGTGAGCAGCGAGCGGCGCACCAGGGCGGTATACGGTCCTACCTGCGGGCAGCGGTCGGCGAAGGCCTGCCATTGCTCGCAAGTGTTTGCCAGGGCTTGGTCGATGTTGCAGTCAGGCTGCACCGGCAAGTGCGAGGGCTGGTGACGCAGG  >  NC_002947/4554113‑4554398

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: