Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,604,204 | C→G | 8.5% | P12A (CCG→GCG) ‡ | PP_4076 → | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,604,204 | 0 | C | G | 8.5% | 129.4 / 2.3 | 44 | P12A (CCG→GCG) ‡ | PP_4076 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base C (19/21); new base G (2/2); total (21/23) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.30e-01 |
CGGACGTGGCGGGTGATCCGGGCTGGTACCAGGTCTCGCTCGCCGTGCGCCCGCACTTCAAGTACATGGGCG‑CGAACTTCGAAATTTCCCTGGTAGGCCGGCTCGACACGCAATGAGTGGTTTCTTCGATCGCTTGATGGCGGACCCGTCCGCCATCCGGGAGGCGTCTCGCCAGGAAAGCGCTTCGCACAAGTTCGCGGCCATCAAGTGCCACCTCGAAACGTTGCTGAACGCTCGCCAAGGTTGCTCCCAGAGCAGCCCCGAGCTGGGCCTGCGCGACTTCAACGGGCATGA > NC_002947/4604059‑4604352 | cGGACGTGGCGGGTGATCCGGGCTGGTACCAGGTCTCGCTCGCCGTGCGCCCGCACTTCAAGTACATGGGCG‑CGAACTTCGAAATTTCCCTGGTAGGCCGGCTCGACACGCAATGAGTGGTTTCTTCGATCGCTTGATGGCGGACCCGt > 2:296734/1‑149 (MQ=255) aCGTGGCGGGTGATCCGGGCTGGTACCAGGTCTCGCTCGCCGTGCGCCCGCACTTCAAGTACATGGGCG‑CGAACTTCGAAATTTCCCTGGTAGGCCGGCTCGACACGCAATGAGTGGTTTCTTCGATCGCTTGATGGCGGACCCGTCCg < 1:296734/149‑1 (MQ=255) ggggCGGGTGATCCGGGCGGGGACCAGGTCTCGCTCGCCGTGCGCCCGCACTTCAAGTACATGGGCG‑CGAACTTCGAAATTTCCCTAGTAGGCCGGCTCGACACGCAATGAGTGGTTTCTTCGATCGCTTGATGGCGGACGGGTCCGc < 4:174272/146‑1 (MQ=18) gggTGATCCGGGCTGGTACCAGGTCTCGCTCGCCGTGCGCCCGCACTTCAAGTACATGGGCG‑CGAACTTCGAAATTTCCCTGGTAGGCCGGCTCGACACGCAATGAGTGGTTTCTTCGATCGCTTGATGGCGGACGGGTCCGCCATcaa < 4:301580/149‑3 (MQ=255) aTCCGGGCTGGTACCAGGTCTCGCTCGCCGTGCGCCCGCACTTCAAGTACATGGGCG‑CGAACTTCGAAATTTCCCTGGTAGGCCGGCTCGACACGCAATGAGTGGTTTCTTCGATCGCTTGATGGCGGACCCGTCCGCCATCCGGGAg < 7:28819/148‑1 (MQ=255) tCCGGGCTGGTACCAGGTCTCGCTCGCCGTGCGCCCGCACTTCAAGTACATGGGCG‑CGAACTTCGAAATTTCCCTGGTAGGCCGGCTCGACACGCAATGAGTGGTTTCTTCGATCGCTTGATGGCGGACCCGTCCGCCATCCGGGAGGc > 5:286395/1‑149 (MQ=255) tGGTACCAGGTCTCGCTCGCCGTGCGCCCGCACTTCAAGTACATGGGCG‑CGAACTTCGAAATTTCCCTGGTAGGCCGGCTCGACACGCAATGAGTGGTTTCTTCGATCGCTTGATGGCGGACCCGTCCGCCATCCGGGAGGCGTCTCGc > 5:264779/1‑149 (MQ=255) ggTACCAGGTCTCGCTCGCCGTGCGCCCGCACTTCAAGTACATGGGCG‑CGAACTTCGAAATTTCCCTGGTAGGCCGGCTCGACACGCAATGAGTGGTTTCTTCGATCGCTTGATGGCGGACCCGTCCGCCATCCGGGAGGCGTCTCGc > 7:5161/1‑148 (MQ=255) ccAGGTCTCGCTCGCCGTGCGCCCGCACTTCAAGTACATGGGCG‑CGAACTTCGAAATTTCCCTGGTAGGCCGGCTCGACACGCAATGAGTGGTTTCTTCGATCGCTTGATGGCGGACCCGTCCGCCATCCGGGAGGCGTCTCGCCAGGa < 8:58016/149‑1 (MQ=255) cAGGTCTCGCTCGCCGTGCGCCCGCACTTCAAGTACATGGGCGACGAACTTCGAAATTTCCCTGGTAGGCCGGCTCGACACGCAATGAGTGGTTTCTTCGATCGCTTGATGGCGGACCCGTCCGCCATCCGGGAGGCGTCTCGCCAgg > 1:59308/1‑148 (MQ=255) cAGGTCTCGCTCGCCGTGCGCCCGCACTTCAAGTACATGGGCG‑CGAACTTCGAAATTTCCCTGGTAGGCCGGCTCGACACGCAATGAGTGGTTTCTTCGATCGCTTGATGGCGGACCCGTCCGCCATCCGGGAGGCGTCTCGCCAGGa > 2:48956/1‑148 (MQ=255) cAGGTCTCGCTCGCCGTGCGCCCGCACTTCAAGTACATGGGCG‑CGAACTTCGAAATTTCCCTGGTAGGCCGGCTCGACACGCAATGAGTGGTTTCTTCGATCGCTTGATGGCGGACCCGTCCGCCATCCGGGAGGCGTCTCGCCAGGa < 2:59308/148‑1 (MQ=255) ggTCTCGCTCGCCGTGCGCCCGCACTTCAAGTACATGGGCG‑CGAACTTCGAAATTTCCCTGGTAGGCCGGCTCGACACGGAATGAGTGGTTTCTTCGATCGCTTGATGGCGGACCCGTCCGCCATCCgg < 1:72425/129‑1 (MQ=255) ggTCTCGCTCGCCGTGCGCCCGCACTTCAAGTACATGGGCG‑CGAACTTCGAAATTTCCCTGGTAGGCCGGCTCGACACGCAATGAGTGGTTTCTTCGATCGCTTGATGGCGGACCCGTCCGCCATCCgg > 2:72425/1‑129 (MQ=255) gctcgcCGTGCGCCCGCACTTCAAGTACATGGGCG‑CGAACTTCGAAATTTCCCTGGTAGGCCGGCTCGACACGCAATGAGTGGTTTCTTCGATCGCTTGATGGCGGACCCGTCCGCCATCCGGGAGGCGTCTCGCCAGGAAAGCGCTTc > 7:41708/1‑149 (MQ=255) gctcgcCGTGCGCCCGCACTTCAAGTACATGGGCG‑CGAACTTCGAAATTTCCCTGCTAGGCGGGCGCGACACGCAATGAGTGGTTTCTTCGATCGCTTGATGGCGGACCCGTCCGCCATCCGGGAGGCGTCTCGCCAGGAAAGCGCtt < 1:99548/148‑1 (MQ=255) ccGCACTTCAAGTACATGGGCG‑CGAACTTCGAAATTTCCCTGGTAGGCCGGCTCGACACGCAATGAGTGGTTTCTTCGATCGCTTGATGGCGGACCCGTCCGCCATCCGGGAGGCGTCTCGCCAGGAAAGCGCTTCGCACAAGTTcgcg < 4:225202/149‑1 (MQ=255) aaGTACATGGGCG‑CGAACTTCGAAATTTCCCTGGTAGGCCGGCTCGACACGCAATGAGTGGTTTCTTCGATCGCTTGATGGCGGACCCGTCCGCCATCCGGGAGGCGTCTCGCCAGGAAAGCGCTTCGCACAAGTTCGCGGCCATCaa < 6:286395/148‑1 (MQ=255) cATGGGCG‑CGAACTTCGAAATTTCCCTGGTAGGCCGGCTCGACACGCAATGAGTGGTTTCTTCGATCGCTTGATGGCGGACCCGTCCGCCATCCGGGAGGCGTCTCGCCAGGAAAGCGCTTCGCACAAGTTCGCGGCCATCAAGTGCCa < 1:48956/149‑1 (MQ=255) cATGGGCG‑CGAACTTCGAAATTTCCCTGGTAGGCCGGCTCGACACGCAATGAGTGGTTTCTTCGATCGCTTGATGGCGGACCCGTCCGCCATCCGGGAGGCGTCTCGCCAGGAAAGCGCTTCGCACAAGTTCGCGGCCATCAAGTGCCa < 4:272058/149‑1 (MQ=255) gcg‑cGAACTTCGAAATTTCCCTGGTAGGCCGGCTCGACACGCAATGAGTGGTTTCTTCGATCGCTTGATGGCGGACCCGTCCGCCATCCGGGAGGCGTCTCGCCAGGAAAGCGCTTCGCACAAGTTCGCGGCCATCAAGTGCCACCTc > 4:131192/1‑148 (MQ=255) ttCGAAATTTCCCTGGTAGGCCGGCTCGACACGCAATGAGTGGTTTCTTCGATCGCTTGATGGCGGACCCGTCCGCCATCCGGGAGGCGTCTCGCCAGGAAAGCGCTTCGCACAAGTTCGCGGCCATCAAGTGCCACCTCGAAACGTTg < 6:50143/149‑1 (MQ=255) tCGAAATTTCCCTGGTAGGCCGGCTCGACACGCAATGAGTGGTTTCTTCGATCGCTTGATGGCGGACCCGTCCGCCATCCGGGAGGCGTCTCGCCAGGAAAGCGCTTCGCACAAGTTCGCGGCCATCAAGTGCCACCTCGAAACGTTGc > 3:7126/1‑149 (MQ=255) cGAAATTTCCCTGGTAGGCCGGCTCGACACGCAATGAGTGGTTTCTTCGATCGCTTGATGGCGGACCCGTCCGCCATCCGGGAGGCGTCTCGCCAGGATAGCGCTTCGCACAAGTTCGCGGCCATCAAGTGCCACCTCGAAACGTTg < 1:72127/147‑1 (MQ=255) cGAAATTTCCCTGGTAGGCCGGCTCGACACGCAATGAGTGGTTTCTTCGATCGCTTGATGGCGGACCCGTCCGCCATCCGGGAGGCGTCTCGCCAGGAAAGCGCTTCGCACAAGTTCGCGGCCATCAAGTGCCACCTCGAAACGTTGc < 7:86947/148‑1 (MQ=255) tAGGCCGGCTCGACACGCAATGAGTGGTTTCTTCGATCGCTTGATGGCGGACCCGTCCGCCATCCGGGAGGCGTCTCGCCAGGAAAGCGCTTCGCACAAGTTCGCGGCCATCAAGTGCCACCt > 3:38746/1‑123 (MQ=255) tAGGCCGGCTCGACACGCAATGAGTGGTTTCTTCGATCGCTTGATGGCGGACCCGTCCGCCATCCGGGAGGCGTCTCGCCAGGAAAGCGCTTCGCACAAGTTCGCGGCCATCAAGTGCCACCt < 4:38746/123‑1 (MQ=255) ggCCGGCTCGACACGCAATGAGTGGTTTCTTCGATCGCTTGATGGCGGACCCGTCCGCCATCCGGGAGGCGTCTCGCCAGGAAAGCGCTTCGCACAAGTTCGCGGCCATCAAGTGCCACCTCGAAACGTTGCTGAACGCTCGCCAAgg < 1:160365/148‑1 (MQ=255) ggCCGGCTCGACACGCAATGAGGGGTTTCTTCGATCGCTTGATGGCGGACCCGTCCGCCATCCGGGAGGCGTCTCGCCAGGAAAGCGCTTCGCACAAGTTCGCGGCCATCAAGTGCCACCTCGAAACGTTGCTGAACGCTCGCCAAgg < 2:279387/148‑1 (MQ=255) acGCAATGAGTGGTTTCTTCGATCGCTTGATGGCGGACCCGTCCGCCATCCGGGAGGCGTCTCGCCAGGAAAGCGCTTCGCACAAGTTCGCGGCCATCAAGTGCCACCTCGAAACGTTGCTGAACGCTCGCCAAGGTTGCTCCCagag > 1:202603/1‑148 (MQ=255) cGCAATGAGTGGTTTCTTCGATCGCTTGATGGCGGACCCGTCCGCCATCCGGGAGGCGTCTCGCCAGGAAAGCGCTTCGCACAAGTTCGCGGCCATCAAGTGCCACCTCGAAACGTTGCTGAACGCTCGCCAAGGTTGCTCCCAGagca > 3:293802/1‑149 (MQ=255) ggTTTCTTCGATCGCTTGATGGCGGACCCGTCCGCCATCCGGGAGGCGTCTCGCCAGGAAAGCGCTTCGCACAAGTTCGCGGCCATCAAGTGCCACCTCGAAACGTTGCTGAACGCTCGCCAAGGTTGCTCCCAGAGCAGCCCCGAGCt > 3:122742/1‑149 (MQ=255) tttCTTCGATCGCTTGATGGCGGACCCGTCCGCCATCCGGGAGGCGTCTCGCCAGGAAAGCGCTTCGCACAAGTTCGCGGCCATCAAGTGCCACCTCGAAACGTTGCTGAACGCTCGCCAAGGTTGCTCCCAGAGCAGCCCCGAGCTgg < 4:122742/149‑1 (MQ=255) cttcGATCGCTTGATGGAGGACCCGTCCGCCATCCGGGAGGCGTCTCGCCAGGAAAGCGCTTCGCACAAGTTCGCGCCCATCAAGTGCCACCTCGAAACGTTGCTGAACGCTCGCCAAGGTTGCTCCCAGAGCAGCCCCGAGCTGGGcc > 8:275491/1‑149 (MQ=255) tCGCTTGATGGCGGACCCGTCCGCCATCCGGGAGGCGTCTCTCCAGGAAATCGCTTCGCACAAGTTCGCGGCCATCAAGTGCCACCTCGAAACGTTGCTGAACGCTCGCCAAGGTTGCTCCCAGAGCATCCCCGAGATGGGCCTgcgc > 3:124477/1‑148 (MQ=255) tcccggATGGCGGACGGGTCCGCCATCCGGGAGGCGTCTCGCCAGGAAAGCGCTTCGCACAAGTTCGCGGCCATCAAGTGCCACCTCGAAACGTTGCTGAACGCTCGCCAAGGTTGCTCCCAGAGCAGCCCCGAGCTGGGCCTGCGCGa > 2:188248/6‑149 (MQ=255) tcccggATGGCGGACGGGTCCGCCATCCGGGAGGCGTCTCGCCAGGAAAGCGCATCGCACAAGTTCGCGGCCATCAAGTGCCACCTCGAAACGTTGCTGAACGCTCGCCAAGGTTGCTCCCAGAGCAGCCCCGAGCTCGGCCTGCGCGa > 8:68057/6‑149 (MQ=255) gCTTGATGGCGGACCCGTCCGCCATCCGGGAGGCGTCTCGCCAGGAAAGCGCTTCGCACAAGTTCGCGGCCATCAAGTGCCACCTCGAAACGTTGCTGAACGCTCGCCAAGGTTGCTCCCAGAGCAGCCCCGAGCTGGGCCTGCGCGAc < 8:5161/149‑1 (MQ=255) gCTTGATGGCGGACCCGTCCGCCATCCGGGAGGCGTCTCGCCAGGAAAGCGCTTCGCACAAGTTCGCGGCCATCAAGTGCCACCTCGAAACGTTGCTGAACGCTCGCCAAGGTTGCTCCCAGAGCAGCCCCGAGCTGGGCCTGCGCGAc < 4:293802/149‑1 (MQ=255) cTTGATGGCGGACCCGTCCGCCATCCGGGAGGCGTCTCGCCAGGAAAGCGCTTCGCACAAGTTCGCGGCCATCAAGTGCCAc > 6:187772/1‑82 (MQ=255) cTTGATGGCGGACCCGTCCGCCATCCGGGAGGCGTCTCGCCAGGAAAGCGCTTCGCACAAGTTCGCGGCCATCAAGTGCCAc < 5:187772/82‑1 (MQ=255) gATGGCGGACCCGTCCGCCATCCGGGAGGCGTCTCGCCAGGAAAGCGCTTCGCACAAGTTCGCGGCCATCAAGTGCCACCTCGAAACGTTGCTGAACGCTCGCCAAGGTTGCTCCCAGAGCAGCCCCGAGCTGGGCCTGCGCGACTTc > 1:157029/1‑148 (MQ=255) gCGGACCCGTCCGCCATCCGGGAGGCGTCTCACCAGGAAAGCGCTTCGCACAAGTTCGCGGCCATCAAGTGCCACCTCGAAACGTTGCTGAACGCTCGCCAAGGTTGCTCCCAGAGCAGCCCCGAGCTGGGc > 2:109541/1‑132 (MQ=255) aCCCGTCCGCCATCCGGGAGGCGTCTCGCCAGGAAAGCGCTTCGCACAAGTGCGCGGCCATCAAGTGCCACCTCGAAACGTTGCTGAACGCTCGCCAAGGTTGCTCCCAGAGCAGCCCCGAGCTGGGCCTGCGCGACTTCAACGGGCAt < 8:41708/149‑1 (MQ=255) ccGTCCGCCATCCGGGAGGCGTCTCGCCAGGAAAGCGCTTCGCACAAGTTCGCGGCCATCAAGTGCCACCTCGAAACGTTGCTGAACGCTCGCCAAGGTTGCTCCCAGAGCAGCCCCGAGCTGGGCCTGCGCGACTTCAACGGGCATGa > 5:232911/1‑149 (MQ=255) | CGGACGTGGCGGGTGATCCGGGCTGGTACCAGGTCTCGCTCGCCGTGCGCCCGCACTTCAAGTACATGGGCG‑CGAACTTCGAAATTTCCCTGGTAGGCCGGCTCGACACGCAATGAGTGGTTTCTTCGATCGCTTGATGGCGGACCCGTCCGCCATCCGGGAGGCGTCTCGCCAGGAAAGCGCTTCGCACAAGTTCGCGGCCATCAAGTGCCACCTCGAAACGTTGCTGAACGCTCGCCAAGGTTGCTCCCAGAGCAGCCCCGAGCTGGGCCTGCGCGACTTCAACGGGCATGA > NC_002947/4604059‑4604352 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |