| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 1,126,647 | +C | intergenic (‑101/+48) | tdcG‑II ← / ← gcvP‑I | L‑serine dehydratase/glycine dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,126,645 | 1 | . | C | 94.4% | 51.2 / ‑5.8 | 19 | intergenic (‑99/+50) | tdcG‑II/gcvP‑I | L‑serine dehydratase/glycine dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base . (1/0); major base C (6/11); minor base G (1/0); total (8/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.89e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGC‑GGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGC‑GGGTAAA‑CCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACCGGCGGCCAGTAC > NC_002947/1126512‑1126788 | ccgatCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGC‑GGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGC‑GGGTAAACCCGCTCCTAcaca < 4:17094/148‑1 (MQ=255) cgatCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGC‑GGGTTTAACCGCGAATTGGGAGGTATAGCCACCATCGCATTAGC‑GGGTAAACCCGCTCCTAcaca > 4:118440/1‑147 (MQ=38) gCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGC‑GGGTTTAACCCCGAATGCGGAGGTTTAGCCCCCCTAGCATTAGC‑GGGGAAACCCCCGCCTAAAAACAGCCCCCCACCCCACCCCGGTgg > 4:37747/1‑149 (MQ=255) cATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGC‑GGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGC‑GGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAggg < 8:113189/149‑1 (MQ=255) gccccccctGCCAGGTTGGGGGGGGCACATGGCGCCCTGTCGGCGC‑GGGTTAACCCGCGAAGGCGGAGGTATCCCCACCAGCGCATTCGC‑GGTTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATc < 1:130957/143‑1 (MQ=255) cctcctGCCAGGTTGTGGGGTGGACATTCAGCCCTGTAGGCGC‑GGGTTAACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGC‑GGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAgg < 7:67050/149‑1 (MQ=38) ctcctGCCAGGTTGTTGGGGGGACATTGAGCCCTGTAGGCGC‑GGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGC‑GGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGc < 4:118373/149‑1 (MQ=255) ctGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGGGC‑GGTTTTACCCGCGATTGCGGAGGTATAGCCACCATCGCATTCGC‑GGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTc < 6:165235/149‑1 (MQ=38) tGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGGTTTACCC‑CCAAAGCGGGGGGGTAGGCCCCAACGCAATAGCGGGGGAAA‑CCCCGCCAACACAGACCCCCCCCCCCCCCCCCCGGGGCGGGGGGGGGGATAAGGCgggc > 6:130321/1‑146 (MQ=255) aTTGAGCCCTGTAGGCGC‑GGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGC‑GGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACgg < 3:118440/149‑1 (MQ=255) ccTGTAGGCGC‑GGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGC‑GGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGgcg < 4:120520/149‑1 (MQ=255) ccGCGACTGCGGAGGTATAGCCACCATCGCCTTCGC‑GGGTAAAGCGGCTCGTCCCCGGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTCTCAGGCGGCCTGATAGCTGTCGATCGCCGGGCAGGGGCACCCCCGGTTGCGGTCGc > 4:27382/1‑149 (MQ=255) gcgAATGCGGAGGTATAGCCACCATCGCATTCGC‑GGGTAAACCCGCTCCTacac > 3:120102/1‑54 (MQ=18) gcgAATGCGGAGGTATAGCCACCATCGCATTCGC‑GGGTAAACCCGCTCCTacac < 4:120102/54‑1 (MQ=18) aGGTATAGCCACCATCGCATTCGC‑GGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGt < 8:27564/149‑1 (MQ=255) ccaccaTCGCATTCGC‑GGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGACCACGTTGTCGAACCgg > 3:110914/1‑149 (MQ=255) aTTCGC‑GGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACcggcg > 1:19151/1‑149 (MQ=255) gggTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACCGGCGGCCAGt < 5:130321/149‑1 (MQ=255) gTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACCGGCGGCCAGTAc > 1:66416/1‑149 (MQ=255) | CCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGC‑GGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGC‑GGGTAAA‑CCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACCGGCGGCCAGTAC > NC_002947/1126512‑1126788 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |