| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_002947 | 3,731,403 | Δ61,130 bp | [PP_3298]–[PP_3354] | 56 genes [PP_3298], PP_3299, PP_3300, PP_3301, PP_3302, PP_3303, PP_3304, PP_3305, PP_3306, PP_3307, paoA, paoB, paoC, kefB‑II, PP_3312, PP_3313, PP_3314, PP_3315, PP_3316, PP_3317, PP_3318, PP_3319, PP_3320, PP_3321, hemBB, PP_3323, folEB, PP_3325, PP_3326, PP_3328, PP_5599, PP_3329, PP_5600, PP_3330, PP_3331, PP_3332, PP_3333, PP_5743, PP_3335, PP_3336, PP_3337, PP_3338, PP_3339, PP_3340, nikR, nikA, nikB, nikC, nikD, nikE, PP_3348, mhpT, PP_3350, atsA, PP_3353, [PP_3354] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 3731403 | 3792532 | 61130 | 23 [0] | [0] 23 | [PP_3298]–[PP_3354] | [PP_3298],PP_3299,PP_3300,PP_3301,PP_3302,PP_3303,PP_3304,PP_3305,PP_3306,PP_3307,paoA,paoB,paoC,kefB‑II,PP_3312,PP_3313,PP_3314,PP_3315,PP_3316,PP_3317,PP_3318,PP_3319,PP_3320,PP_3321,hemBB,PP_3323,folEB,PP_3325,PP_3326,PP_3328,PP_5599,PP_3329,PP_5600,PP_3330,PP_3331,PP_3332,PP_3333,PP_5743,PP_3335,PP_3336,PP_3337,PP_3338,PP_3339,PP_3340,nikR,nikA,nikB,nikC,nikD,nikE,PP_3348,mhpT,PP_3350,atsA,PP_3353,[PP_3354] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3731402 | 0 (0.000) | 23 (0.770) | 22/292 | 0.5 | 100% | coding (300/504 nt) | PP_3298 | CinA domain‑containing protein |
| ? | NC_002947 | 3792533 = | 0 (0.000) | coding (785/1755 nt) | PP_3354 | acyl‑CoA dehydrogenase | |||||
CCCTCCGCCAAGAAGCGTCTGCTAGGTGTAAGCGCGGAAACCATCGAACGGTACGGGCTGACCAGCGAACCAGTCGCATGGGAGATGGCCCTAGGGGCGTTGAAGGACAGCGATGCCAATGTCGTTATCGCAACTACAGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3731262‑3731402‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCTGGCCATCCTCCAGCCATTTCGGCACCAGCAACAGCGAGAGCCCGCGGTTGCCGGGCGGCGCATCCGGCAACCGGGCCAACAC > NC_002947/3792533‑3792675 CCCTCCGCCAAGAAGCGTCTGCTAGGTGTAAGCGCGGAAACCATCGAACGGTACGGGCTGACCAGCGAACCAGTCGCATGGGAGATGGCCCTAGGGGCGTTGAAGGACAGCGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCT > 4:139281/1‑149 CCTCCGCCAAGAAGCGTCTGCTAGGTGTAAGCGCGGAAACCATCGAACGGTACGGGCTGACCAGCGAACCAGTCGCATGGGAGATGGCCCTAGGGGCGTTGAAGGACAGCGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTG > 3:55255/1‑149 CTCCGCCAAGAAGCGTCTGCTAGGTGTAAGCGCGGAAACCATCGAACGGTACGGGCTGACCAGCGAACCAGTCGCATGGGAGATGGCCCTAGGGGCGTTGAAGGACAGCGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGC > 1:174217/1‑149 TCCGCCAAGAAGCGTCTGCTAGGTGTAAGCGCGGAAACCATCGAACGGTACGGGCTGCCCAGCGAACCAGTCGCATGGGAGATGGCCCTAGGGGCGTTGAAGGACAGCGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGCC > 7:105010/1‑149 CTAGGTGTAAGCGCGGAAACCATCGAACGGTACTGGCTGACCAGCGAACCAGTCGCATGGGAGATGGCCCTAGGGGCGTTGAAGGACAGCGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATG < 5:153280/149‑1 CATCGAACGGTACGGGCTGACCAGCGAACCATTCGCATGGGAGATGGCCCTAGGGGCGTTGAAGGACAGCGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTA > 3:115707/1‑147 ATCGAACGGTACGGGCTGACCAGCGAACCAGTCGCATGGGAGATGGCCCTAGGGGCGTTGAAGGACAGCGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAG > 7:100964/1‑149 TCGAACGGTACGGGCTGACCAGCGAACCAGTCGCATGGGAGATGGCCCTAGGGGCGTTGAAGGACAGCGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGT < 4:46374/149‑1 GGCTGACCAGCGAACCAGTCGCATGGGAGATGGCCCTAGGGGCGTTGAAGGACAGCGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCTGG > 8:88193/1‑149 CCAGCGAACCAGTCGCATGGGAGATGGCCCTAGGGGCGTTGAAGGACAGCGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCTGGCCATCC < 7:88193/149‑1 GTCGCATGGGAGATGGCCCTAGGGGCGTTGAAGGACAGCGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGT > 4:102230/1‑120 GTCGCATGGGAGATGGCCCTAGGGGCGTTGAAGGACAGCGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGT < 3:102230/120‑1 AGATGGCCCTAGGGGCGTTGAAGGACAGCGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCTGGCCATCCTCCAGCCATTTCGGCACCAGC < 2:175059/149‑1 GATGGCCCTAGGGGCGTTGAAGGACAGCGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCTGGCCATCCTCCAGCCATTTCGGCACCAGC > 5:151565/1‑148 GGGGCGTTGAAGGACAGCGATGCCAATGGCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCTGGCCATCCTCCAGCCATTTCGGCACCAGCAACAGCGAGA < 2:131764/148‑1 GGGCGGTGAAGGACAGCGATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCTGGCCATCCTCCAGCCATTTCGGCACCAGCAACAGCGAGAGC < 6:126334/149‑1 GATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCTGGCCATCCTCCAGCCATTTCGGCACCAGCAACAGCGAGAGCCCGCGGTTGCCGGGCG > 5:90145/1‑148 GATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCTGGCCATCCTCCAGCCATTTCGGCACCAGCAACAGCGAGAGCCCGCGGTTGCCGGGCG < 6:90145/148‑1 ATGCCAATGTCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCTGGCCATCCTCCAGCCATTTCGGCACCAGCAACAGCGAGAGCCCGCGGTTGCCGGGCGGC < 5:7100/149‑1 GTCGTTATCGCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCTGGCCATCCTCCAGCCATTTCGGCACCAGCAACAGCGAGAGCCCGCGGTTGCCGGGCGGCGCATCCGG > 3:26659/1‑149 GCAACTACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCTGGCCATCCTCCAGCCAGTTCGGCACCAGCAACAGCGAGAGCCCGCGGTTGCCGGGCGGCGCATCCGGCAACCGGGC > 5:154076/1‑149 ACTACAGGGGTGGCGCTGCCCCGGAGGCCCAGCGTATGTTCCAGGCCGTCGCAGTACAGTGGATGGCGCTGGCCATCCTCCAGCCATTTCGGCACCAGCAACAGCGAGAGCCCGCGGGTGCCGGGCGGCGCATCCGGCAACCGGGCCAA < 8:105010/149‑1 ACAGGTGTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCTGGCCATCCTCCAGCCATTTCGGCACCAGCCACAGCGAGAGCCCGCGGTTGCCGGGCGGCGCCTCCGGCAACCGGGCCAACAC > 6:131645/1‑149 CCCTCCGCCAAGAAGCGTCTGCTAGGTGTAAGCGCGGAAACCATCGAACGGTACGGGCTGACCAGCGAACCAGTCGCATGGGAGATGGCCCTAGGGGCGTTGAAGGACAGCGATGCCAATGTCGTTATCGCAACTACAGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3731262‑3731402‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGGCGCTGCCCCGGATGCCCAGCTTATGTTCCAGGCCGTCGCAGTACAGTGTATTGCGCTGGCCATCCTCCAGCCATTTCGGCACCAGCAACAGCGAGAGCCCGCGGTTGCCGGGCGGCGCATCCGGCAACCGGGCCAACAC > NC_002947/3792533‑3792675 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |