New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1499507 =	29 (0.460)	19 (0.330)	10/252	5.7	27.6%	intergenic (+84/‑80)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
	?	NC_002947	= 6060505	73 (1.270)					intergenic (+141/+40)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.

ACCGCAGTTTCCTGCGCCGCGTCATGGAAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1499663‑1499507 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgggagcggGCGTGCCCGCGAAACAAGCGACGCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGTCCAAAATCGCGCCAGCTGTTAGAAATTGAGCAAGACAGTTGCTCCCGCAGGCTATGTGTTAATGCTTAATG  <  NC_002947/6060505‑6060359                                                                                                                                                                                                                                                                                                                  ACCGCAGTTTCCTGCGCCGCGTCATGGAAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGT                                                                                                                                                             <  8:195236/149‑1   CGCAGTTTCCTGCGCCGCGTCATGGAAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGG                                                                                                                                                           >  1:162143/1‑149            CTGCGCCGCGTCATGGAAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGGGC                                                                                                                                                   <  8:56269/148‑1               cggtGCGTCATGGAAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGGGCGT                                                                                                                                                 <  8:337815/143‑1                      TCATGGAAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGGGCGTGCCCGCGAA                                                                                                                                        <  7:355842/149‑1                           GAAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGGGCGTGCCCGCGAAcacc                                                                                                                                    <  7:75634/148‑5                              GAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGGGCGTGCCCGCGAAcaccggc                                                                                                                                 >  5:135857/1‑141                                    GGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGT                                                                                                                          >  3:236807/1‑149                                                          TAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGGGCGTGCCCGCGAAcacc                                                                                                                                    <  3:293205/117‑5                                                          TAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGGGCGTGCCCGCGAAcacc                                                                                                                                    >  4:293205/1‑113                                                          TAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGGGCGTGCCCGCGAAcacc                                                                                                                                    >  2:309922/1‑113                                                          TAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGGGCGTGCCCGCGAAcacc                                                                                                                                    <  1:309922/117‑5                                                                    AGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGG                                                                                            <  4:236807/147‑1                                                                              GATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGGGCGTGCCC                                                                                                                                             >  5:252518/1‑88                                                                              GATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGGGCGTGCCC                                                                                                                                             <  6:252518/88‑1                                                                                                                        GATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGG                                                                                            >  8:168894/1‑95                                                                                                                        GATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGG                                                                                            <  7:168894/95‑1                                                                                                                         ATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTt                                                                                                          >  6:35163/1‑79                                                                                                                         ATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTt                                                                                                          <  5:35163/80‑2                                                                                                                               CCGCTTAATGGCAATCAGTCTGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGG                                                                                            >  7:337461/1‑88                                                                                                                               CCGCTTAATGGCAATCAGTCTGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGG                                                                                            <  8:337461/88‑1                                                                                                                                                  CTGTGGGAGCGGGCGTGCCCGCGAAACAAGCGACGCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGTCCAAAATCGCGCCAGCTGTTAGAAATTGAGCAAGACAGTTGCTCCCGCAGGCTATGTGTTA            <  5:201799/149‑1                                                                                                                                                  CTGTGGGAGCGGGCGTGCCCGCGAAACAAGCGACGCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCG                                                                                             <  7:76400/68‑1                                                                                                                                                  CTGTGGGAGCGGGCGTGCCCGCGAAACAAGCGACGCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCG                                                                                             >  8:76400/1‑68                                                                                                                                                     TGGGAGCGGGCGTGCCCGCGAAACAAGCGACGCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGTCCAAAATCGCGCCAGCTGTTAGAAATTGAGCAAGACAGTTGCTCCCGCAGGCTATGTGTTAATG         <  7:359269/149‑1                                                                                                                                                     TGGGAGCGGGCGTGCCCGCGAAACAAGCGACGCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGAAAGCCCGCGCCCACAGTCCAAAATCGCGCCAGCTGTTAGAAATTGAGCAAGACAGTTGCTCCCGCAGGCTATGTGTTAAT          <  7:245661/148‑1                                                                                                                                                       GGAGCGGGCGTGCCCGCGAAACAAGCGACGCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGTCCAAAATCGCGCCAGCTGTTAGAAATTGAGCAAGACAGTTGCTCCCGCAGGCTATGTGTTAATGCT       <  4:198325/149‑1                                                                                                                                                            GGGCGTGCCCGCGAAACAAGCGACGCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGTCCAAAATCGCGCCAGCTGTTAGAAATTGAGCAAGACAGTTGCTCCCGCAGGCTATGTGTTAATGCTTAATG  <  6:296458/149‑1                                                                                                                                                                                                                                                                                                                  ACCGCAGTTTCCTGCGCCGCGTCATGGAAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1499663‑1499507 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgggagcggGCGTGCCCGCGAAACAAGCGACGCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGTCCAAAATCGCGCCAGCTGTTAGAAATTGAGCAAGACAGTTGCTCCCGCAGGCTATGTGTTAATGCTTAATG  <  NC_002947/6060505‑6060359

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.