New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2099982	36 (0.570)	8 (0.150)	7/230	6.4	18.2%	intergenic (‑93/‑112)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
	?	NC_002947	= 2100031	42 (0.800)					intergenic (‑142/‑63)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTT‑CCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGC  >  NC_002947/2099836‑2100128                                                                                                                                                   |                                                                                                                                                    cTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGtt                                                                                                                                                   >  7:50840/1‑149 (MQ=255) cTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGtt                                                                                                                                                   <  5:76169/149‑1 (MQ=255) cTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGtt                                                                                                                                                   >  5:54161/1‑149 (MQ=255) cTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGAGGGCTTGCCCGtt                                                                                                                                                   >  1:256117/1‑149 (MQ=255)    gATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGCT‑cc                                                                                                                                                >  7:84982/1‑148 (MQ=255)     atatCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTT‑ccc                                                                                                                                               <  2:256117/148‑1 (MQ=255)      tatCCATGTGTCCCGAGCCGGTTTCCGGTTCCTTGCGCTGGGCAAGCATAGCCGAATAGCCCCGGGTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTT‑CCca                                                                                                                                              <  4:360962/148‑1 (MQ=255)        tCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTT‑CCcaca                                                                                                                                            <  4:83063/148‑1 (MQ=255)        tCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTT‑CCCACAg                                                                                                                                           <  1:241078/149‑1 (MQ=255)        tCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTT‑CCCACAg                                                                                                                                           >  2:65075/1‑149 (MQ=255)         ccATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGCT‑CCCACAgg                                                                                                                                          >  4:11959/1‑149 (MQ=255)          cATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGAAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTT‑CCCACAGGt                                                                                                                                         <  8:50840/149‑1 (MQ=255)           aTGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTGTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTT‑CCCACAGGTa                                                                                                                                        >  6:212959/1‑149 (MQ=255)           aTGAGGCCGGCGCCGGTTTCCGTTCCCTTGCTCTGCGCATTCATTGCCTAATCCCCCCGGCTGTTGGTGGGTGTTTGTTTTATTTTCTTTTTTTCGCCATGGGGGGGCGGCTTGGCGCCCCTCCGCGGGCTTGCCCGTT‑CCCACAGGTa                                                                                                                                        <  6:54161/149‑1 (MQ=255)              aGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTT‑CCCACAGGTACa                                                                                                                                      <  3:18274/148‑1 (MQ=255)                tCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTT‑cc                                                                                                                                                >  4:11329/1‑136 (MQ=255)                tCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTT‑cc                                                                                                                                                <  3:11329/136‑1 (MQ=255)                  ccGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCGTCCGCGGGCTTGCCCGTT‑CCCACAGGTACAGCTTa                                                                                                                                 <  3:54826/149‑1 (MQ=255)                             tCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTT‑CCCACAGGTACAGCTTAGCCCCAGGCt                                                                                                                       >  7:38309/1‑148 (MQ=255)                               ccGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTT‑CCCACAGGTACAGCTTAGCCCCAGGCTGaa                                                                                                                    <  1:65075/149‑1 (MQ=255)                                cgttcgttGCGCTGCGAAAGCATAGACTAATAGCCCCGGGTGGTGGTGGGTCTGTCTGTTCATTTCAGTTGCGCGCCATGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTT‑CCCACAGGTACAGCTTAGCCCCAGGCTGAAc                                                                                                                   <  8:130594/149‑1 (MQ=38)                                     cTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTT‑CCCACAGGTACAGCTTAGCCCCAGGCTGAACGCaa                                                                                                               <  8:38309/148‑1 (MQ=255)                                     cTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTT‑CCCACAGGTACAGCTTAGCCCCAGGCTGAACGCaa                                                                                                               <  5:212959/148‑1 (MQ=255)                                              cgcAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTT‑CCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTggg                                                                                                     >  6:222172/1‑149 (MQ=255)                                                 aaGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTT‑CCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGc                                                                                                  >  8:276326/1‑149 (MQ=255)                                                  aGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTT‑CCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCg                                                                                                 <  5:222172/149‑1 (MQ=255)                                                   gCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTTGCCGGT‑ACCACAGGTACAGCGTAGCCCCAGGCTGCACGCAAGCCCGGTGGGGGCgg                                                                                                >  5:93406/1‑149 (MQ=255)                                                    cATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTT‑CCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCggg                                                                                               <  7:276326/149‑1 (MQ=255)                                                                  cccGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCGTGGCCGTTACCCAC‑GGTACAGCTTTGCCCCACGCGGAACCCCAGCCCGGTGGGGGCGGGCAAGCCCGcggcgg                                                                                 >  4:339104/1‑149 (MQ=255)                                                                             gtggGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCCTT‑ACCACAGGGACAGCTTAGCCCCAGGCGGAACGCAAGCCCAGTGGGAGCCGGCAAGCCCGCGGCGGGGGGCGCAGCg                                                                      >  6:264347/1‑149 (MQ=255)                                                                                        tgtTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTT‑ACCACAGGTACAGCGTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCaaaa                                                            >  7:252961/1‑148 (MQ=255)                                                                                          ttCTTTTCAGTTTAGCCCCCAGGGGGGGCCGGTTGGCGCCCCTCCGCGGGCTTGCCCGTC‑CCCACTGTTACCGCTTCCCCCCTGTCTTAACGCAAGCCTGGTGGGTGCGGGAAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCaaaaaa                                                          <  6:93406/148‑1 (MQ=255)                                                                                             aTTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTTCCCGTT‑ACCACAGGTACAGCTTAGCCCCACGCGGAACGGAAGCCCTGTGGGCGCGGGCCAGCCCGCGGGGGGGCGCGCAGCg                                                                      >  5:337962/1‑133 (MQ=255)                                                                                                                cGGGGGCCGCTTGGCGCCCCTCCCGGGGCTTCCCGGTC‑CCCACTGTTACCGCTTACCCCCCGGCTCACCGCACCCCGTGGGGGAGGGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCAt                                   <  8:252961/149‑1 (MQ=255)                                                                                                                                          ggCTTGCCCGTT‑CCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTg          >  2:232157/1‑148 (MQ=255)                                                                                                                                               gCCCGTT‑CCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGTGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACcgc    >  7:140575/1‑149 (MQ=255)                                                                                                                                                cccGTT‑CCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACcgcg   >  8:172179/1‑149 (MQ=255)                                                                                                                                                 ccGTT‑CCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGTGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCgcgc  <  8:140575/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    CTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTT‑CCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGC  >  NC_002947/2099836‑2100128

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.