| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 684,841 | Δ1 bp | 6.9% | coding (1406/2400 nt) | cadA‑II ← | cadmium translocating P‑type ATPase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 684,841 | 0 | T | . | 6.9% | 183.5 / 6.7 | 58 | coding (1406/2400 nt) | cadA‑II | cadmium translocating P‑type ATPase |
| Reads supporting (aligned to +/- strand): ref base T (25/29); new base . (2/2); total (27/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CAGGGCGCCGGCCAGGCGGTAAAGGTCGGCGCTGTTGCCGTCCAGCGCCTGGCTGTGAACCACCTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCACGGCGACGGCGTTGATCAGCGCGGTTTCCAGCGGTACCCCAGCCAGCCAC > NC_002947/684693‑684987 | cAGGGCGCCGGCCAGGCGGTAAAGGTCGGCGCTGTTGCCGTCCAGCGCCTGGCTGTGAACCACCTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCt < 7:239414/149‑1 (MQ=255) gcCGGCCAGGCGGTAAAGGTCGGCGCTGTTGCCGTCCAGCGCCTGGCTGTGAACCACCTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑a < 7:245768/149‑1 (MQ=255) gCGGTAAAGGTCGGCGCTGTTGCCGTCCAGCGCCTGGCTGTGAACCACCTGCGGGCTGCCGGAGGTGAGGGAGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGt < 4:299500/149‑1 (MQ=255) cGGTAAAGGTCGGCGCTGTTGCCGTCCAGCGCCTGGCTGTGAACCACCTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTg < 1:250946/149‑1 (MQ=255) cGGTAAAGGTCGGCGCTGTTGCCGTCCAGCGCCTGGCTGTGAACCACCTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTg < 5:174645/149‑1 (MQ=255) ttGCCGTCCAGCGCCTGGCTGTGAACCACCTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCgg > 1:254155/1‑148 (MQ=255) cAGCGCCTGGCTGTGAACCACCTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCa > 5:103220/1‑149 (MQ=255) cAGCGCCTGGCTGTGAACCACCTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCa < 2:122096/149‑1 (MQ=255) gcgcCTGGCTGTGAACCACCTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCCCGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCAt > 2:266396/1‑148 (MQ=255) gcgcCTGGCTGTGAACCACCTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCAt > 3:12436/1‑148 (MQ=255) cgcCTGGCTGTGAACCACCTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGa < 6:103220/149‑1 (MQ=255) ccTGGCTGTGAACCACCTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATc < 5:204932/149‑1 (MQ=255) gCTGTGAACCACCTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCgcgg > 8:214368/1‑149 (MQ=255) tgAACCACCTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGcggcgg < 8:268541/148‑1 (MQ=255) tgAACCACCTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCggcggg > 3:306363/1‑149 (MQ=255) aaCCACCTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCggcgggc < 2:205327/148‑1 (MQ=255) accaccTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGgtgt < 4:12436/149‑1 (MQ=255) accaccTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGt > 4:289774/1‑149 (MQ=255) caccTGCGGGCTGCCGGAGGTGAGGGTGCAGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCCTCGGCATCCTTGATC‑AGGATGCCGTGCCGGGCGGCGACCCCGGAACCGGCCATCATCGCGGCGGCCGTgg > 7:97112/1‑149 (MQ=255) ccTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGc > 1:145231/1‑148 (MQ=255) cTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCGGTGGCGGGCGGCGACCCCg > 2:311469/1‑118 (MQ=255) cTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCg < 1:311469/118‑1 (MQ=255) cGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAgg < 2:254155/148‑1 (MQ=255) gggCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGcc > 8:282798/1‑149 (MQ=255) gggCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGcc < 4:30208/149‑1 (MQ=255) gCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGa < 5:60534/149‑1 (MQ=255) cTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAg < 5:37402/149‑1 (MQ=255) gCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAggg < 2:283063/149‑1 (MQ=255) gAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCa < 2:145231/149‑1 (MQ=255) gTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAggg < 7:236015/149‑1 (MQ=255) gAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAgggg > 3:71060/1‑148 (MQ=255) ggTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAg < 4:71060/148‑1 (MQ=255) ccGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGAt < 7:282798/149‑1 (MQ=255) ggTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGcggcgg > 4:195314/1‑113 (MQ=255) ggTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGcggcgg < 3:195314/113‑1 (MQ=255) gAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCacgg > 8:1069/1‑149 (MQ=255) tACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCacggcgacgg > 6:4161/1‑149 (MQ=255) cgcgGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCacggcgacggcg > 2:30917/1‑149 (MQ=255) cgcgGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCacggcgacggcg > 2:351537/1‑149 (MQ=255) aCCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTggcgggcg > 1:269875/1‑57 (MQ=255) aCCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTggcgggcg < 2:269875/57‑1 (MQ=255) aCCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCACGGCGACGGCGTTGATCAg > 4:159813/1‑149 (MQ=255) ccGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCACGGCGACGGCGTTGATCAgc < 3:289774/149‑1 (MQ=255) cGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCACGGCGACGGCGTTGATCAgcg > 8:43226/1‑149 (MQ=255) cATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCACGGCGACGGCGTTGATCAGcgcg > 8:253863/1‑149 (MQ=255) cAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCACGGCGACGGCGTTGATCAGCGCGGTTTCCAGCgg < 1:351537/147‑1 (MQ=255) cAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCACGGCGACGGCGTTGATCAGCGCGGTTTCCAGCGGTa < 7:214368/149‑1 (MQ=255) cAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCACGGCGACGGCGTTGATCAGCGCGGTTTCCAGCGGTa < 7:253863/149‑1 (MQ=255) aGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCACGGCGACGGCGTTGATCAGCGCGGTTTCCAGCGGTAc < 7:1069/149‑1 (MQ=255) aGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCACGGCGACGGCGTTGATCAGCGCGGTTTCCAGCGGTAc > 2:56374/1‑149 (MQ=255) gggCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGTGATGACCAGCACGGCGACGGCGTTGATCAGCGCGGTTTCCAGCGGTAcc < 1:266396/149‑1 (MQ=255) cTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCACGGCGACGGCGTTGATCAGCGCGGTTTCCAGCGGTAccc > 6:112773/1‑147 (MQ=255) cGGCATCC‑TGATCAAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCACGGCGACGGCGTTGATCAGCGCGGTTTCCAGCGGTACCccagc > 5:222133/1‑148 (MQ=255) ggCATCC‑TGATCAAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCacggcgacggcg > 1:70295/1‑115 (MQ=255) ggCATCC‑TGATCAAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCacggcgacggcg < 2:70295/115‑1 (MQ=255) ggCATCC‑TGATCAAGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCACGGCGACGGCGTTGATCAGCGCGGTTTCCAGCGGTACCccagcca < 6:222133/149‑1 (MQ=255) gCATGCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCACGGCGACGGCGTTGATCAGCGCGGTTTCCAGCGGTACCccagccag > 6:132520/1‑149 (MQ=255) cATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCACGGCGACGGCGTTGATCAGCGCGGTTTCCAGCGGTACCCcagccagc < 2:62863/149‑1 (MQ=255) ccTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCACGGCGACGGCGTTGATCAGCGCGGTTTCCAGCGGTACCCCAGccagccac > 4:316170/1‑149 (MQ=255) | CAGGGCGCCGGCCAGGCGGTAAAGGTCGGCGCTGTTGCCGTCCAGCGCCTGGCTGTGAACCACCTGCGGGCTGCCGGAGGTGAGGGTGCCGGTTTTGTCGAACACTACGCGGTTGACCGCATGGGCACGCTCCAGGGCTTCGGCATCCTTGATC‑AGGATGCCGTGGCGGGCGGCGACCCCGGTACCGGCCATGATCGCGGCGGGCGTGGCCAGGCCGAGGGCGCAGGGGCAGGCGATGACCAGCACGGCGACGGCGTTGATCAGCGCGGTTTCCAGCGGTACCCCAGCCAGCCAC > NC_002947/684693‑684987 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |