| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,440,466 | Δ1 bp | 6.8% | intergenic (+31/‑45) | pcaF‑II → / → PP_2138 | beta‑ketoadipyl‑CoA thiolase subunit beta/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,440,466 | 0 | T | . | 6.8% | 359.4 / 19.8 | 117 | intergenic (+31/‑45) | pcaF‑II/PP_2138 | beta‑ketoadipyl‑CoA thiolase subunit beta/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (52/55); new base . (2/6); total (55/62) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.79e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.54e-01 | |||||||||||
Only 100 of 118 total aligned reads displayed.
GGCGCGGATTTCCGGCACCCTGCTCAACGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCAGTGTTGCGCGGCACTCCGAAACCGAAGAGTGGATG > NC_002947/2440318‑2440603 | ggCGCGGATTTCCGGCACCCTGCTCAACGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGt < 4:211275/149‑1 (MQ=255) cgcgGATTTCCGGCACCCTGCTCAACGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGc > 2:91311/1‑149 (MQ=255) gcgGATTTCCGGCACCCTGCTCAACGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGcc > 3:290496/1‑149 (MQ=255) gATTTCCGGCACCCTGCTCAACGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCg < 1:9188/149‑1 (MQ=255) aTTTCCGGCACCCTGCTCAACGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGCACTAG‑GCCCCgg < 8:166609/149‑1 (MQ=255) tCCGGCACCCTGCTCAACGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGCACTAG‑GCCCCggct < 7:322440/148‑3 (MQ=255) ccGGCACCCTGCTCAACGTCATGACGAAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGgtttt < 1:276106/149‑1 (MQ=255) ccGGCACCCTGCTCAACGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGgtttt > 1:70035/1‑149 (MQ=255) cGGCACCCTGCTCAACGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGCACTAG‑GCCCCggctgc < 3:320336/148‑5 (MQ=255) cGGCACCCTGCTCAACGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGCACTAG‑GCCCCggctgc < 8:29169/148‑5 (MQ=255) cGGCACCCTGCTCAACGTCATGAAGCAAAATGGCGGGACGCTGGGGGTTGCGACCATGTGCGTCGGCCGGGGCCAAGGTATCACCACTGCCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGCACTAG‑GCCCCggctgc < 6:371836/148‑5 (MQ=255) gCACCCTGCTCAACGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGgttttgtt > 3:850/1‑149 (MQ=255) gCACCCTGCTCAACGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGgtttt > 8:155195/1‑146 (MQ=255) gCACCCTGCTCAACGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGgtttt < 7:155195/146‑1 (MQ=255) aCCCTGCTCAACGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGCACTAG‑GCCCCggc < 8:255619/141‑2 (MQ=255) aCCCTGCTCAACGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGCACTAG‑GCCCCggc > 7:255619/1‑140 (MQ=255) ccTGCTCAACGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGtttttt < 2:33576/149‑1 (MQ=255) ccTGCTCAACGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGtttttt < 4:850/149‑1 (MQ=255) cTCAACGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAg < 1:91311/148‑1 (MQ=255) aaCGTCATGTAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGttt > 7:208537/1‑149 (MQ=255) cGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGttttt < 2:269765/149‑1 (MQ=255) cATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGgtttt < 2:318484/130‑1 (MQ=255) cATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGgtttt > 1:318484/1‑130 (MQ=255) gAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCa > 4:250627/1‑136 (MQ=255) gAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCa < 3:250627/136‑1 (MQ=255) aGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCagga < 3:158411/148‑1 (MQ=255) cAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCa < 4:81893/143‑1 (MQ=255) cAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGgt > 5:49024/1‑149 (MQ=255) aaaTGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGgtgt > 5:23248/1‑149 (MQ=255) aTGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGc < 7:172251/149‑1 (MQ=255) gCGGTACGCTGGGTGTTGCGACCATGTGCGGCGGCCTGGGCCAAGGTATCACCACTGTCTGCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAAc < 8:308833/149‑1 (MQ=255) ggTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAAc > 4:327709/1‑147 (MQ=255) ggTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAAc < 3:327709/147‑1 (MQ=255) gCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCa < 3:298104/140‑1 (MQ=255) tGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATa > 7:157995/1‑149 (MQ=255) tGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCACCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGAt > 8:346571/1‑148 (MQ=255) gtgtTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACaa > 1:173626/1‑149 (MQ=255) tgtTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATg > 7:161855/1‑139 (MQ=255) tgtTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATg < 8:161855/139‑1 (MQ=255) gCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAgg > 7:39359/1‑149 (MQ=255) gACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCg > 6:94728/1‑149 (MQ=255) gACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCg > 5:213643/1‑149 (MQ=255) tgtgCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATAc > 5:78469/1‑149 (MQ=255) gTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGc > 4:280733/1‑124 (MQ=255) gTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGc < 3:280733/124‑1 (MQ=255) ggCCTGGGCCAAGGTATCACCACTGTCTTCGTACGCGTCTGATCGCGTTGCGGGACAGCAGCCGGGGC‑CTAGTGCCCGGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTa < 1:141738/149‑1 (MQ=255) gCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCa < 3:223739/145‑1 (MQ=255) gCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTAc < 6:49024/149‑1 (MQ=255) ggCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACaaa < 3:176368/147‑1 (MQ=255) ggCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAgg > 7:32838/1‑149 (MQ=255) ggCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACACCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTAAGGTTTTTTTCAGGACGTGTGCAAAATTCAGATACAACCAGGCGAAAACCGGCATTAAAAAgc > 8:173387/1‑148 (MQ=255) gCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGAAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAggg > 3:189278/1‑149 (MQ=255) ccAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATa > 8:320064/1‑118 (MQ=255) ccAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATa < 7:320064/118‑1 (MQ=255) ccAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGc < 2:70035/149‑1 (MQ=255) ccAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGc > 7:307137/1‑149 (MQ=255) ccAAGGTACCCCCACTGTCTTCGCACGCGTCTCATCGCGTAGCGGGCCAGCAGCCGGGGC‑CTAGCGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAACGGc < 4:290496/149‑1 (MQ=255) cAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGcc < 8:157995/149‑1 (MQ=255) aGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGc > 5:228900/1‑134 (MQ=255) ggTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGAGTATACCGGCATTACAAAGGGCCTGa < 1:5392/149‑1 (MQ=255) tATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAg < 8:32838/148‑1 (MQ=255) tCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAg < 8:29609/138‑1 (MQ=255) tCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAg > 7:29609/1‑138 (MQ=255) tCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGACGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTa < 5:94728/148‑1 (MQ=255) accacTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAAc > 5:188317/1‑99 (MQ=255) accacTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAAc < 6:188317/99‑1 (MQ=255) accacTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGa > 7:232576/1‑106 (MQ=255) accacTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGa < 8:232576/106‑1 (MQ=255) accacTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTAcc < 6:23248/148‑1 (MQ=255) accacTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCg > 3:260584/1‑149 (MQ=255) accacTGTCTTCGAACGCGTCTGATCGCCTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTAcc > 1:205111/1‑148 (MQ=255) ccacTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGTTTTTTTTCAGGAGGTGTGCAACATGCAGATAAAACCAGGCGTATACAGGCATTACAAAGTGCCTGAGTACAgt > 7:131387/1‑149 (MQ=255) ccacTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATAc < 6:176299/122‑1 (MQ=255) cacTGTCTTCTAACGCGTCTGATCGAGTAGCCGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCatg > 5:242539/1‑149 (MQ=255) cTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTc < 8:208537/149‑1 (MQ=255) tGTCATCGAACCCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGA‑CTAGTGCCCCGGTATTCTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTAAAACGGCATTACAAAGGGCCTGAGTACCGAGTCt > 2:216797/1‑149 (MQ=255) cTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTc < 6:213643/148‑1 (MQ=255) ttCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGAGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCAg > 1:254030/1‑149 (MQ=255) cGAACGCGTCTGATCGCGTAGCGGGACATCAGCCGGGGC‑CTAGTGCCCCTGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCAgt < 7:346571/148‑1 (MQ=255) cGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCa < 2:120098/146‑1 (MQ=255) cGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCAgtg > 4:154185/1‑149 (MQ=255) cGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCAg < 5:15674/147‑1 (MQ=255) aaCGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCa < 1:360819/144‑1 (MQ=255) gTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTc > 4:307395/1‑67 (MQ=255) tCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCAGTGTTGCGCgg < 3:154185/149‑1 (MQ=255) tGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCAGTGTTGCGCGGCa > 4:12609/1‑149 (MQ=255) gATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCAGTGTTGCGCGacac > 4:254783/1‑149 (MQ=255) aTCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGAGTCTTCAGTGTTGCGCGGCACt > 6:34004/1‑149 (MQ=255) tCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCAGTGTTGCGCGGCACTc < 4:260584/149‑1 (MQ=255) gCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCAGTGTTGCGCGGCACTCCGAAAcc < 3:254783/149‑1 (MQ=255) cGGGACAGGAGCCGGGGC‑CTAGTTCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCAGTGTTGCGCGGCACTCCGAAACCg < 6:242539/149‑1 (MQ=255) ggACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCAGTGTTGCGCGGCACTCCGAAACCGaa < 8:307137/149‑1 (MQ=255) gACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTGTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCAGTGTTGCGCGGCACTCCGAAACCg > 2:37757/1‑146 (MQ=255) acaaaaccGGGGCACTAG‑GCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCAGTGTTGCGCGGCACTCCGAAACCGAagag > 2:224483/7‑149 (MQ=255) cagcCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCgt < 4:255400/110‑1 (MQ=255) cagcCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCAGTGTTGCGCGGCACTCCGAAACCGAAGAGTg > 3:117539/1‑148 (MQ=255) agcCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTAcc > 8:255410/1‑107 (MQ=255) agcCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTAcc < 7:255410/107‑1 (MQ=255) gcCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCAGTGTTGCGCGGCACTCCGAAACCGAAGAGTGGAt > 5:166878/1‑149 (MQ=255) ccGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCAGTGTTGCGCGGCACTCCGAAACCGAAGAGTGGATg < 4:117539/149‑1 (MQ=255) | GGCGCGGATTTCCGGCACCCTGCTCAACGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCAGTGTTGCGCGGCACTCCGAAACCGAAGAGTGGATG > NC_002947/2440318‑2440603 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |