| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,267,765:1 | +C | 100% | coding (93/1254 nt) | galP‑IV ← | porin‑like protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,267,765 | 1 | . | C | 80.0% | 147.2 / 37.8 | 60 | coding (93/1254 nt) | galP‑IV | porin‑like protein |
| Reads supporting (aligned to +/- strand): ref base . (8/4); new base C (23/23); total (32/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.48e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: Polymorphic indel expands or contracts a homopolymer stretch. | |||||||||||
CGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCTGGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑G‑‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTATTGTTCTCCACGTTCAATAGGCGCAGCAGACCGCCCCAGGCCAGC > NC_002947/4267624‑4267907 | cGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCTGGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCTTCTTGGAAGAT‑G‑‑ccaaggg < 7:18327/149‑6 (MQ=255)cGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCTGGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑G‑‑cc‑ccccc < 5:322670/149‑2 (MQ=255) tAGCCAGAGCTGAACTTGAAGATGAAACCCTGGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑gcg > 5:286893/1‑149 (MQ=255) gagCTGAACTTGAAGATGAAACCCTGGGCCCACTCTTCAACCTTGCCGTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑G‑‑CC‑CCCC‑TCTT‑GCTCCCAGGc < 8:127561/149‑1 (MQ=255) gCTGAACTTGAAGATGAAACCCTGGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGcc > 7:136325/1‑149 (MQ=255) cTGAACTTGAAGATGAAACCCTGGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAAGG‑‑CC‑CCCC‑TCGT‑GCGCCCCGGCCg > 8:213236/1‑149 (MQ=255) cTGAACTTGAAGATGAAACCCTGGGCCCACTCTTCAACCTTGCCCTTGGCGGCCACCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGGGCAATGTCAGCGCACC‑‑CTT‑GGCCTCGTCCAAGAA‑G‑‑CC‑CCCCGTCGT‑GCGCCCGGGCCg > 8:207797/1‑149 (MQ=255) cTTGAAGATGAAACCCTGGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCaaa < 2:98786/149‑1 (MQ=255) ttGAAGATGAAACCCTGGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAAc > 4:84120/1‑149 (MQ=255) gAAGATGAAACCCTGGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGTTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCAAC‑‑CTT‑GGCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑CCGCCCAGGCAGCCCAAcc > 4:141191/1‑148 (MQ=255) aGATGAAACCCTGGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAg > 8:166975/1‑149 (MQ=255) aGATGAAACCCTGGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAg < 7:213236/149‑1 (MQ=255) aGATGAAACCCTGGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAg < 7:207797/149‑1 (MQ=255) aGATGAAACCCTGGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAg < 6:286893/149‑1 (MQ=255) gAAACCCTGGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAACTAGTAGTTTCGCAATTTCATCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑T‑‑CC‑CCCC‑TATT‑GCGCCCAGGCCGGCAAACCAAGGACa > 2:167282/1‑148 (MQ=255) aaCCCTGGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑G‑‑CCACCCC‑TCTT‑GCGCCCCGGCCGGCAAAACAACGCCaa > 4:288195/1‑148 (MQ=255) cccACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCg > 7:218863/1‑148 (MQ=255) ccACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑G‑‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGaaa > 4:36485/1‑149 (MQ=255) cACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCTGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGaaa < 3:288195/149‑1 (MQ=255) aaaCATTGCCC‑TGGCGGGCCCCCGGGGGCGGCAAACGCGGGTGAACTATTATTTGCGCAATTTTACCCCCCCCTCTTCGGCATCTTCCAAGAA‑G‑‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGcc < 1:293512/147‑1 (MQ=255) ccTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTTCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGAc < 5:206858/149‑1 (MQ=255) ccTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGAAAACCAAGGCCAAACGCCAGACAAACAGCCAGCAc > 6:206858/1‑149 (MQ=255) ttGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGACCg > 4:61022/1‑149 (MQ=255) cccTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAACC‑‑CC‑CCCC‑TATT‑GCGCCCAGGCCGCCCAACCAAGGCCAACCGCCAGCGAAACAGCCAGGACCGa > 6:102898/1‑147 (MQ=255) ccTTGGCGGCCCCCGGTTCGGGGAAATCGCTGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑G‑‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGACCGAACgg < 1:167282/149‑1 (MQ=255) ccTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GT‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGACCGAACg > 3:334308/1‑149 (MQ=255) ccTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGACCGAACg > 8:205840/1‑149 (MQ=255) ccTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGACCGAACg > 1:272527/1‑149 (MQ=255) ccTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCGTCCAAGAA‑G‑‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAACCGCCAGCGAAAGAGCCAGGACCGAACgg > 6:365852/1‑149 (MQ=255) cccccGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGACCGAACGGGCCAGCGt < 3:326082/149‑1 (MQ=255) cccGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGACCGAACGGGCCAGCGTg > 4:304131/1‑148 (MQ=255) cGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGACCGAACGGGCCAGCGTGc > 1:163888/1‑147 (MQ=255) gcgGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCCGCGAAACAGCCAGGACCGAACGGGCCAGCGTGCAAGTtgtg > 2:227911/1‑149 (MQ=255) gcgGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCatt < 3:160371/149‑1 (MQ=255) gTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCattatt > 7:139578/1‑149 (MQ=255) gAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCa > 6:286269/1‑105 (MQ=255) gAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCa < 5:286269/105‑1 (MQ=255) aaGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCattattatt < 3:61022/148‑1 (MQ=255) tagtagtTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GCCCC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCattattatt < 7:1873/146‑1 (MQ=255) tagtagtTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GCCCC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACCCCACCGAAACACCCAGGACCGAACGGGCCAGCGTGCAAGATGAGTGCAAAattattattta > 8:1873/1‑146 (MQ=255) tagtagtTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTTAGCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTATTGt > 1:280714/1‑148 (MQ=255) gtagtTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GT‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTATTGTtctc < 4:334308/149‑1 (MQ=255) gtagtTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGTCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTATTGTtctc < 3:84120/149‑1 (MQ=255) cgcAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTATTGTTCTCCACGtt < 1:227911/148‑1 (MQ=255) cAATGTCAGCCCACA‑‑CTT‑GGCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCCGCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGACCGAACGGGCCAGAGTGAAAGTTGTGTCCATCATTATTATTGTTATCAACGTTCa > 4:216766/1‑148 (MQ=255) tGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTATTGTTCTCCACGTTCAATAg < 8:292394/149‑1 (MQ=255) tGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTATTGTTCTCCACGTTCAATAg < 2:163888/149‑1 (MQ=255) tGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTATTGTTCTCCACGTTCAATAg < 3:304131/149‑1 (MQ=255) tGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTATTGTTCTCCACGTTCAATAg < 2:280714/149‑1 (MQ=255) gTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTATTGTTCTCCACGTTCAATAgg > 8:32180/1‑149 (MQ=255) aGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTATTGTTCTCCACGTTCAATa < 6:25189/144‑1 (MQ=255) aGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTATTGTTCTCCACGTTCAATa > 5:25189/1‑144 (MQ=255) aGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTATTGTTCTCCACGTTCAATAGgcg > 5:6090/1‑148 (MQ=255) cc‑‑cTT‑GGCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTATTGTTCTCCACGTTCAATAGGCGCAGCAGa < 8:218863/149‑1 (MQ=255) cc‑‑cTT‑GGCATCTTCCAAGAA‑G‑‑CCACCCC‑TCTT‑GCGCCCAGGCCTGCAAAACAAGGCCAAACGCCAGCGAAACAGCCACGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTATTGTTCTCCACGTTCAATAGGCGCAGCAGa < 3:20615/149‑1 (MQ=255) tt‑GGCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTATTGTTCTCCACGTTCAATAGGCGCAGCAGACCg > 7:131543/1‑149 (MQ=255) ggCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTATTGTTCTCCACGTTCAATAGGCGCAGCAGACCg < 7:166975/147‑1 (MQ=255) ggCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTATTGTTCTCCACGTTCAATAGGCGCAGCAGACCGc < 8:136325/148‑1 (MQ=255) ggCATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGACAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTATTGTTCTCCACGTTCAATAGGCGCAGCAGACCgac > 3:254935/1‑147 (MQ=255) cATCTTCCAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTATTGTTCTCCACGTTCAATAGGCGCAGCAGACCGcccc < 5:102898/149‑1 (MQ=255) ccAAGAA‑GC‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTATTGTTCTCCACGTTCAATAGGCGCAGCAGACCGCCCCAg < 7:205840/145‑1 (MQ=255) ccAAGAA‑G‑‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTATTGTTCTCCACGTGCAATAGGCGAAGCAGACGCCCCCAGGCCAg > 8:141678/1‑149 (MQ=255) aagaa‑gc‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTATTGTTCTCCACGTTCAATAGGCGCAGCAGACCGCCCCAGGCCAg > 1:48990/1‑148 (MQ=255) aagaa‑gc‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTATTGTTCTCCACGTTCAATAGGCGCAGCAGACCGCCCCAGGCCAGc < 8:139578/149‑1 (MQ=255) | CGGGGTGTAGCCAGAGCTGAACTTGAAGATGAAACCCTGGGCCCACTCTTCAACCTTGCCCTTGGCGGCCCCCGGGTCGCGGAAATCGCGGTTGAAGTAGTAGTTGCGCAATGTCAGCCCACC‑‑CTT‑GGCATCTTCCAAGAA‑G‑‑CC‑CCCC‑TCTT‑GCGCCCAGGCCGGCAAACCAAGGCCAAACGCCAGCGAAACAGCCAGGACCGAACGGGCCAGCGTGCAAGTTGTGTCCATCATTATTATTGTTCTCCACGTTCAATAGGCGCAGCAGACCGCCCCAGGCCAGC > NC_002947/4267624‑4267907 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |