| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,440,461:1 | +A | 6.6% | intergenic (+26/‑50) | pcaF‑II → / → PP_2138 | beta‑ketoadipyl‑CoA thiolase subunit beta/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,440,461 | 1 | . | A | 6.6% | 486.5 / 28.2 | 122 | intergenic (+26/‑50) | pcaF‑II/PP_2138 | beta‑ketoadipyl‑CoA thiolase subunit beta/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (54/60); new base A (2/6); total (56/66) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.86e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.14e-01 | |||||||||||
Only 100 of 128 total aligned reads displayed.
TCCGGGGCGCGGATTTCCGGCACCCTGCTCAACGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCAGTGTTGCGCGGCACTCCGAAACCGAAGAGTGGATG > NC_002947/2440313‑2440603 | tCCGGGGCGCGGATTTCCGGCACCCTGCTCAACGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGc > 3:93218/1‑149 (MQ=255) cGGGGCGCGGATTTCCGGCACCCTGCTCAACGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGc < 6:127063/147‑1 (MQ=255) ggggCGCGGATTTCCGGCACCCTGCTCAACGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTa < 2:261594/149‑1 (MQ=255) gcgcGGATTTCCGGCACCCTGCTCAACGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGcactagg > 7:166609/1‑143 (MQ=255) gcgGATTTCCGGCACCCTGCTCAACGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGcc > 3:290496/1‑149 (MQ=255) aTTTCCGGCACCCTGCTCAACGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGCACTAG‑GCCCCgg < 8:166609/149‑1 (MQ=255) tttCCGGCACCCTGCTCAACGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGgt > 1:33576/1‑149 (MQ=255) tCCGGCACCCTGCTCAACGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGCACTAG‑GCCCCggct < 7:322440/148‑3 (MQ=255) ccGGCACCCTGCTCAACGTCATGACGAAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGgtttt < 1:276106/149‑1 (MQ=255) ccGGCACCCTGCTCAACGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGgtttt > 1:70035/1‑149 (MQ=255) cGGCACCCTGCTCAACGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGCACTAG‑GCCCCggctgc < 3:320336/148‑5 (MQ=255) cGGCACCCTGCTCAACGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGCACTAG‑GCCCCggctgc < 8:29169/148‑5 (MQ=255) cGGCACCCTGCTCAACGTCATGAAGCAAAATGGCGGGACGCTGGGGGTTGCGACCATGTGCGTCGGCCGGGGCCAAGGTATCACCACTGCCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGCACTAG‑GCCCCggctgc < 6:371836/148‑5 (MQ=255) gCACCCTGCTCAACGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGgtttt < 7:155195/146‑1 (MQ=255) aCCCTGCTCAACGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGCACTAG‑GCCCCggc > 7:255619/1‑140 (MQ=255) ccTGCTCAACGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGtttttt < 6:63764/149‑1 (MQ=255) ccTGCTCAACGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGtttttt < 4:850/149‑1 (MQ=255) ccTGCTCAACGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGtttttt < 2:33576/149‑1 (MQ=255) cTGCTCAACGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGc < 2:205523/125‑1 (MQ=255) cTCAACGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAg < 1:91311/148‑1 (MQ=255) aaCGTCATGTAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGttt > 7:208537/1‑149 (MQ=255) aaCGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTa < 2:104749/122‑1 (MQ=255) aaCGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTa > 1:104749/1‑122 (MQ=255) cGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGttttt < 2:269765/149‑1 (MQ=255) gTCATGAAGCAAATTGGCGGTACGATGGTTGTTGCGACCATGTGCTTCGGCCTTTGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCTGTTTTGTTTTTTCAGGtttttt < 5:31776/149‑1 (MQ=255) gTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGtttttt < 5:15700/149‑1 (MQ=255) cATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGgtttt > 1:318484/1‑130 (MQ=255) aTGAAGCAAAATTGCGGTACTCTGGGTGTTGCGAACATGTGCGTCGGCCTGGGCCAAGGTATCACCAATGTCTTAGAACTCGTCTGATAGCGTAGCGTGACAGAAGCCGGGGC‑CTAGTTCCCCGGTTTTGTGTTTTCAGGTTTTTTTCa > 7:297818/1‑149 (MQ=255) gAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCa < 3:250627/136‑1 (MQ=255) gAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCa > 4:250627/1‑136 (MQ=255) aGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCagga < 3:158411/148‑1 (MQ=255) cAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCa > 3:81893/1‑143 (MQ=255) cAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCa < 4:81893/143‑1 (MQ=255) aaaTGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGgtgt > 5:23248/1‑149 (MQ=255) aTGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGc < 7:172251/149‑1 (MQ=255) ggTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAAc > 4:327709/1‑147 (MQ=255) ggTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAAc < 3:327709/147‑1 (MQ=255) gCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCa > 4:298104/1‑140 (MQ=255) tGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCACCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGAt > 8:346571/1‑148 (MQ=255) gtgtTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACaa > 1:173626/1‑149 (MQ=255) tgtTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATg > 7:161855/1‑139 (MQ=255) tgtTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATg < 8:161855/139‑1 (MQ=255) gCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAgg > 7:39359/1‑149 (MQ=255) gACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCg > 6:94728/1‑149 (MQ=255) tgtgCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATAc > 5:78469/1‑149 (MQ=255) gTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGc < 3:280733/124‑1 (MQ=255) gTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGc > 4:280733/1‑124 (MQ=255) ggCCTGGGCCAAGGTATCACCACTGTCTTCGTACGCGTCTGATCGCGTTGCGGGACAGCAGCCGGGGC‑CTAGTGCCCGGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTa < 1:141738/149‑1 (MQ=255) gCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCa > 4:223739/1‑145 (MQ=255) gCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCa < 3:223739/145‑1 (MQ=255) ggCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACaaa < 3:176368/147‑1 (MQ=255) ggCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACACCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTAAGGTTTTTTTCAGGACGTGTGCAAAATTCAGATACAACCAGGCGAAAACCGGCATTAAAAAgc > 8:173387/1‑148 (MQ=255) gCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGAAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAggg > 3:189278/1‑149 (MQ=255) ccAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATa < 7:320064/118‑1 (MQ=255) ccAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATa > 8:320064/1‑118 (MQ=255) ccAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGc > 7:307137/1‑149 (MQ=255) ccAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGc < 2:70035/149‑1 (MQ=255) ccAAGGTACCCCCACTGTCTTCGCACGCGTCTCATCGCGTAGCGGGCCAGCAGCCGGGGC‑CTAGCGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAACGGc < 4:290496/149‑1 (MQ=255) cAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGcc < 8:157995/149‑1 (MQ=255) aGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGc > 5:228900/1‑134 (MQ=255) aGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGc < 6:228900/134‑1 (MQ=255) ggTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGAGTATACCGGCATTACAAAGGGCCTGa < 1:5392/149‑1 (MQ=255) tATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAg < 8:32838/148‑1 (MQ=255) tCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAg < 8:29609/138‑1 (MQ=255) tCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGACGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTa < 5:94728/148‑1 (MQ=255) accacTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAAc < 6:188317/99‑1 (MQ=255) accacTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAAc > 5:188317/1‑99 (MQ=255) accacTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGa > 7:232576/1‑106 (MQ=255) accacTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGa < 8:232576/106‑1 (MQ=255) accacTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTAcc < 2:205111/148‑1 (MQ=255) accacTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCg > 3:260584/1‑149 (MQ=255) accacTGTCTTCGAACGCGTCTGATCGCCTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTAcc > 1:205111/1‑148 (MQ=255) ccacTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGTTTTTTTTCAGGAGGTGTGCAACATGCAGATAAAACCAGGCGTATACAGGCATTACAAAGTGCCTGAGTACAgt > 7:131387/1‑149 (MQ=255) ccacTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATAc < 6:176299/122‑1 (MQ=255) cacTGTCTTCTAACGCGTCTGATCGAGTAGCCGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCatg > 5:242539/1‑149 (MQ=255) cTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTc < 8:208537/149‑1 (MQ=255) cTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTc < 6:213643/148‑1 (MQ=255) ttCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGAGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCAg > 1:254030/1‑149 (MQ=255) cGAACGCGTCTGATCGCGTAGCGGGACATCAGCCGGGGC‑CTAGTGCCCCTGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCAgt < 7:346571/148‑1 (MQ=255) cGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCa < 2:120098/146‑1 (MQ=255) cGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCAgtg > 4:154185/1‑149 (MQ=255) cGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCAg < 5:15674/147‑1 (MQ=255) aaCGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCa > 2:360819/1‑144 (MQ=255) tCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCAGTGTTGCGCgg < 3:154185/149‑1 (MQ=255) tGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCAGTGTTGCGCGGCa > 4:12609/1‑149 (MQ=255) gATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCAGTGTTGCGCGacac > 4:254783/1‑149 (MQ=255) aTCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGAGTCTTCAGTGTTGCGCGGCACt > 6:34004/1‑149 (MQ=255) tCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCAGTGTTGCGCGGCACTc < 4:260584/149‑1 (MQ=255) cGGGACAGGAGCCGGGGC‑CTAGTTCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCAGTGTTGCGCGGCACTCCGAAACCg < 6:242539/149‑1 (MQ=255) ggACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCt < 7:70815/120‑1 (MQ=255) ggACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCAGTGTTGCGCGGCACTCCGAAACCGaa < 8:307137/149‑1 (MQ=255) gACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTGTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCAGTGTTGCGCGGCACTCCGAAACCg > 2:37757/1‑146 (MQ=255) acaaaaccGGGGCACTAG‑GCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCAGTGTTGCGCGGCACTCCGAAACCGAagag > 2:224483/7‑149 (MQ=255) cagcCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCgt > 3:255400/1‑110 (MQ=255) cagcCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCAGTGTTGCGCGGCACTCCGAAACCGAAGAGTg > 3:117539/1‑148 (MQ=255) agcCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTAcc < 7:255410/107‑1 (MQ=255) agcCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTAcc > 8:255410/1‑107 (MQ=255) gcCGGGGT‑CTATTGCCTCGGTTTTGTTTTTTCAGGTTTTTTTCAGTAGGTGTTCAACATGCAGATACAACCAGGAGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCAGTGTTGCGCGGCACTCCGAAACAGAAGAGTGGAt < 8:297818/149‑1 (MQ=255) gcCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCAGTGTTGCGCGGCACTCCGAAACCGAAGAGTGGAt > 5:166878/1‑149 (MQ=255) ccGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCAGTGTTGCGCGGCACTCCGAAACCGAAGAGTGGATg < 4:117539/149‑1 (MQ=255) | TCCGGGGCGCGGATTTCCGGCACCCTGCTCAACGTCATGAAGCAAAATGGCGGTACGCTGGGTGTTGCGACCATGTGCGTCGGCCTGGGCCAAGGTATCACCACTGTCTTCGAACGCGTCTGATCGCGTAGCGGGACAGCAGCCGGGGC‑CTAGTGCCCCGGTTTTGTTTTTTCAGGTTTTTTTCAGGAGGTGTGCAACATGCAGATACAACCAGGCGTATACCGGCATTACAAAGGGCCTGAGTACCGTGTCTTCAGTGTTGCGCGGCACTCCGAAACCGAAGAGTGGATG > NC_002947/2440313‑2440603 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |