Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 2,682,906:1 +C 9.4% coding (1472/1890 nt) prpE → propionyl‑CoA synthetase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,682,9061.C 9.4% 193.9 / 13.7 53coding (1472/1890 nt)prpEpropionyl‑CoA synthetase
Reads supporting (aligned to +/- strand):  ref base . (25/23);  new base C (2/3);  total (27/26)
Fisher's exact test for biased strand distribution p-value = 6.69e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.58e-01

ATTGCCCTGCCATTGCCACCCGGTTGCAGTCAGACGCTGTGGGGGGATCACGAGCGCTACCTGCAGGCCTACCTGCGCACGTATCCGGGGTACTACCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCAACGTTTCCGGTCATCGTTTGTCCACCGGTGAAATGGAAGACCTGGTCGCCCGCCACCCGGCGGTAGCGGAGTGTGCTGTGATCGGTGTGCATGACGAGATCAAGGGCCAG  >  NC_002947/2682761‑2683039
                                                                                                                                                  |                                                                                                                                     
aTTGCCCTGCCATTGCCACCCGGTTGCAGTCAGACGCTGTTGGGGGATCACGAGCGCTACCTGCAGGCCTACCTGCGCACGTATCCGGGGTACTACCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATg                                                                                                                                      <  5:142066/147‑1 (MQ=255)
aTTGCCCTGCCATTGCCACCCGGTTGCAGTCAGACGCTGTGGGGGGATCACGAGCGCTACCTGCAGGCCTACCTGCGCACGTATCCGGTGTACTACCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATggg                                                                                                                                    <  7:164736/149‑1 (MQ=255)
aTTGCCCTGCCATTGCCACCCGGTTGCAGTCAGACGCTGTGGGGGGATCACGAGCGCTACCTGCAGGCCTACCTGCGCACGTATCCGGGGTACTACCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATg                                                                                                                                      >  6:142066/1‑147 (MQ=255)
 ttGCCCTGCCATTGCCACCCGGTTGCAGTCAGACGCTGTGGGGGGATCACGAGCGCTACCTGCAGGCCTACCTGCGCACGTATCCGGGGTACTACCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATgggg                                                                                                                                   <  7:344691/149‑1 (MQ=255)
 ttGCCCTGCCATTGCCACCCGGTTGCAGTCAGACGCTGTGGGGGGATCACGAGCGCTACCTGCAGGCCTACCTGCGCACGTATCCGGGGTACTACCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATgggg                                                                                                                                   <  7:258176/149‑1 (MQ=255)
    cccTGCCATTGCCACCCGGTTGCAGTCAGACGCTGTGGGGGGATCACGAGCGCTACCTGCAGGCCTACCTGCGCACGTATCCGGGGTACTACCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGgcg                                                                                                                                 >  1:316969/1‑148 (MQ=255)
    cccTGCCATTGCCACCCGGTTGCAGTCAGACGCTGTGGGGGGATCACGAGCGCTACCTGCAGGCCTACCTGCGCACGTATCCGGGGTACTACCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGgcg                                                                                                                                 <  7:217413/148‑1 (MQ=255)
      cTGCCATTGCCACCCGGTTGCAGTCAGACGCTGTGGGGGGATCACGAGCGCTACCTGCAGGCCTACCTGCGCACGTATCCGGGGTACTACCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGGCGCAc                                                                                                                              >  3:28462/1‑149 (MQ=255)
            ttGCCCCCCGGTTGCAGTCAGACGCTGTGGGGGGATCCCGAGCGCTACCTGCAGGCCTACCTGCGCACGTATCCGGGGTACTACCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTGCGTCTACATCATGGGGCGCACCgatga                                                                                                                        >  5:183211/1‑149 (MQ=255)
            ttGCCACCCGGTTGCAGTCAGACGCTGTGGGGGGATCACGAGCGCTACCTGCAGGCCTACCTGCGCACGTATCCGGGGTACTACCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGGCGCACCgatga                                                                                                                        >  4:96041/1‑149 (MQ=255)
            ttGCCACCCGGTTGCAGTCAGACGCTGTGGGGGGATCACGAGCGCTACCTGCAGGCCTACCTGCGCACGTATCCGGGGTACTACCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGGCGCACCgatga                                                                                                                        <  4:101980/149‑1 (MQ=255)
            ttGCCACCCGGTTGCAGTCAGACGCTGTGGGGGGATCACGAGCGCTACCTGCAGGCCTACCTGCGCACGTATCCGGGGTACTACCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGGCGCACCgatga                                                                                                                        >  3:310994/1‑149 (MQ=255)
                cACCCGGTTGCAGTCAGACGCTGTGGGGGGATCACGAGCGCTACCTGCAGGCCTACATGCGCACGTATCCGGGGTACTACCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGGCTCACCGATGAtgt                                                                                                                     >  4:349616/1‑148 (MQ=255)
                     ggTTGCAGTCAGACGCTGTGGGGGGATCACGAGCGCTACCTGCAGGCCTACCTGCGCACGTATCCGGGGTACTACCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATCGGTGCGCCCCATGAtgtagacga                                                                                                               <  7:68675/149‑7 (MQ=255)
                     ggTTGCAGTCAGACGCTGTGGGGGGATCACGAGCGCTACCTGCAGGCCTACCTGCGCACGTATCCGGGGTACTACCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCaa                                                                                                               <  4:28462/149‑1 (MQ=255)
                        tGCAGTCAGACGCTGTGGGGGGATCACGAGCGCTACCTGCAGGCCTACCTGCGCACGTATCCGGGGTACTACCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCAACGt                                                                                                            >  4:130062/1‑149 (MQ=255)
                           aGTCAGACGCTGTGGGGGGATCACGAGCGCTACCTGCAGGCCTACCTGCGCACGTATCCGGGGTACTACCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATCGGTGCGCCCCATGAtgt                                                                                                                     >  2:32059/1‑137 (MQ=255)
                           aGTCAGACGCTGTGGGGGGATCACGAGCGCTACCTGCAGGCCTACCTGCGCACGTATCCGGGGTACTACCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTCCGTCTACATCATCGGTGCGCCCCATGAtgt                                                                                                                     <  1:32059/137‑1 (MQ=255)
                            gTCAGACGCTGTGGGGGGATCACGAGCGCTACCTGCAGGCCTACCTGCGCACGTATCCGGGGTACTACCACACGGTCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCAACGTTTcc                                                                                                        <  2:316969/149‑1 (MQ=255)
                                     tgtgGGGGGATCACGAGCGCTACCTGCAGGCCTACCTGCGCACGTATCCGGGGTACTACCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCAACGTTTCCGGTCATCGt                                                                                               >  5:254721/1‑149 (MQ=255)
                                       tgGGGGGATCACGAGCGCTACCTGCAGGCCTACCTGCGCACGTATCCGGGGTACTACCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCAACGTTTCCGGTCATCGt                                                                                               <  4:310994/147‑1 (MQ=255)
                                         gggggATCACGAGCGCTACCTGCAGGCCTACCTGCGCACGTATCCGGGGTACTACCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCAACGTTTCCGGTCATCGTTTGt                                                                                           >  8:15313/1‑149 (MQ=255)
                                            ggATCACGAGCGCTACCTGCAGGCCTACCTGCGCACGTATCCGGGGTACTACCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCAACGTTTCCGGTCATCGTTTGTCCa                                                                                        >  1:163086/1‑149 (MQ=255)
                                                        cTACCTGCAGGCCTACCTGCGCACGTATCCGGGGTACTACCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATCGGTGCGCCCCATGAtgta                                                                                                                    >  4:186357/1‑108 (MQ=255)
                                                        cTACCTGCAGGCCTACCTGCGCACGTATCCGGGGTACTACCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATCGGTGCGCCCCATGAtgta                                                                                                                    <  3:186357/109‑2 (MQ=255)
                                                         tACCTGCAGGCCTACCTGCGCACGTATCCGGGGTACTACCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCAACGTTTCCGGTCATCGTTTGTCCACCGGTGAAATgg                                                                            >  4:331732/1‑148 (MQ=255)
                                                            cTGCAGGCCTACCTGCGCACGTATCCGGGGTACTACCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCAACGTTTCCGGTCATCGTTTGTCCACCGGTGAAATGGAAGa                                                                        >  5:39464/1‑149 (MQ=255)
                                                              gCAGGCCTACCTGCGCACGTATCCGGGGTACTACCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCAACGTTTCCGGTCATCGTTTGTCCACCGGTGAAATGGAAGAcc                                                                      >  3:47784/1‑149 (MQ=255)
                                                              gCAGGCCTACCTGCGCACGTATCCGGGGTACTACCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCAACGTTTCCGGTCATCGTTTGTCCACCGGTGAAATGGAAGAcc                                                                      >  1:54548/1‑149 (MQ=255)
                                                                aGGCCTACCTGCTCACGTATCCTGTGTACTACCAGACGGGCTATGGCGGCTATCTGTCAGATGATGGTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCAACGTTTCCGGTCATCGTTTGTCCACCGGTGAAATGGAAGACCt                                                                     <  3:349616/148‑1 (MQ=255)
                                                                aGGCCTACCTGCGCACGTATCCGGGGTACTACCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCAACGTTTCCGGTCATCGTTTGTCCACCGGTGAAATGGAAGACCTg                                                                    <  3:96041/149‑1 (MQ=255)
                                                                     tACCTGCGCACGTATCCGGGGTACTACCCCACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCAACGTTTCCGGTCATCGTTTGTCCACCGGTGAAATGGAAGACCTGGTcgc                                                               >  4:331023/1‑149 (MQ=255)
                                                                            gcACGTATCCGGGGTACTACCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCAACGTTTCCGGTCATCGTTTGTCCACCGGTGAAATGGAAGACCTGGTCGCCCGCCAc                                                        >  4:58605/1‑149 (MQ=255)
                                                                              aCGTATCCGGGGTACTACCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCAACGTTTCCGGTCATCGTTTGTCCACCGGTGAAATGGAAGACCTGGTCGCCCGCCAccc                                                      >  1:66111/1‑149 (MQ=255)
                                                                              aCGTATCCGGGGTACTACCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCAACGTTTCCGGTCATCGTTTGTCCACCGGTGAAATGGAAGACCTGGTCGCCCGCCAccc                                                      >  8:6407/1‑149 (MQ=255)
                                                                                     cGGGGTACTACCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCAACGTTTCCGGTCATCGTTTGTCCACCGGTGAAATgg                                                                            >  2:318409/1‑120 (MQ=255)
                                                                                     cGGGGTACTACCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCAACGTTTCCGGTCATCGTTTGTCCACCGGTGAAATgg                                                                            <  1:318409/120‑1 (MQ=255)
                                                                                       gggTACTACCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCAACGTTTCCGGTCATCGTTTGTCCACCGGTGAAATGGAAGACCTGGTCGCCCGCCACCCGGCGGTAGc                                             <  3:130062/149‑1 (MQ=255)
                                                                                       gggTACTACCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCAACGTTTCCGGTCATCGTTTGTCCACCGGTGAAATGGAAGACCTGGTCGCCCGCCACCCGGCGGTAGc                                             <  7:15313/149‑1 (MQ=255)
                                                                                        ggTACTACCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCAACGTTTCCGGTCATCGTTTGTCCACCGGTGAAATGGAAGACCTGGTCGCCCGCCACCCGGCGGTAGCg                                            <  5:189146/149‑1 (MQ=255)
                                                                                            cttccACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCAACGTTTCCGGTCATCGTTTGTCCACCGGTGAAATGGAAGACCTGGTCGCCCGCCACCCGGCGGTAGCGGAgt                                        <  6:254721/146‑1 (MQ=255)
                                                                                              acCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCAACGTTTCCGGTCATCGTTTGTCCACCGGTGAAATGGAAGACCTGGTCGCCCGCCACCCGGCGGTAGCGGAgtgt                                      >  4:120684/1‑149 (MQ=255)
                                                                                               ccACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCAACGTTTCCGGTCATCGTTTGTCCACCGGTGAAATGGAAGACCTGGTCGCCCGCCACCCGGCGGTAGCGGa                                          <  4:277153/144‑1 (MQ=255)
                                                                                               ccACACGGGCGATGGCGGCTAGCTGGACGATGATGGTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCAACGTTTCCGGTCATCGTTTGTCCACCGGTGAAATGGAAGACCTGGTCGCCCGCCACCCGGCGGTAGCGGa                                          >  3:277153/1‑144 (MQ=255)
                                                                                                 acacGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCAACGTTTCCGGTCATCGTTTGTCCACCGGTGAAATGGAAGACCTGGTCGCCCGCCACCCGGCGGTAGCGGAgt                                        >  1:286008/1‑144 (MQ=255)
                                                                                                 acacGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCAACGTTTCCGGTCATCGTTTGTCCACCGGTGAAATGGAAGACCTGGTCGCCCGCCACCCGGCGGTAGCGGAgt                                        <  2:286008/144‑1 (MQ=255)
                                                                                                  cacGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCAACGTTTCCGGTCATCGTTTGTCCACCGGTGAAATGGAAGACCTGGTCGCCCGGCACCCGGCGGTAGCGGAGTTTGCtg                                  <  2:66111/149‑1 (MQ=255)
                                                                                                  cacGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCAACGTTTCCGGTCATCGTTTGTCCACCGGTGAAATGGAAGACCTGGTCGCCCGCCACCCGGCGGTAGCGGAGTGTGCtg                                  <  2:54548/149‑1 (MQ=255)
                                                                                                   acGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCAACGTTTCCGGTCATCGTTTGTCCACCGGTGAAATGGAAGACCTGGTCGCCCGCCACCcggcg                                                  >  2:257341/1‑132 (MQ=255)
                                                                                                   acGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCAACGTTTCCGGTCATCGATTGTCCACCGGTGAAATGGAAGACCTGGTCGCCCGCCACCcggcg                                                  <  1:257341/132‑1 (MQ=255)
                                                                                                          aTGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCAACGTTTCCGGTCATCGTTTGTCCACCGGTGAAATGGAAGACCTGGTCGCCCGCCACCCGGCGGTAGCGGAGTGTGCTGTGATCGgt                          <  7:6407/149‑1 (MQ=255)
                                                                                                            ggcggcTATCTGGACGATGATGGTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCAACGTTTCCGGTCATCGTTTGTCCACCGGTGAAATGGAAGACCTGGTCGCCCGCCACCCGGCGGTAGCGGAGTGTGCTGTGATCGgtg                         <  6:39464/148‑1 (MQ=255)
                                                                                                                gcTATCTTGACTATGATGTTTTCGTCTACATCATGGTGCGGACCGATTATGTGATCTACGTTTCCCGTCATCGTTTGTCCACCGGTTAAATGGAAGACCTGGTCGCCCGCCAACCGGCGGTAGCGGAGTGTGCTGTGATCGGTGTGCAt                    <  7:95529/149‑1 (MQ=255)
                                                                                                                           gatgatGGTTTCGTCTACATCATGGGGCGGACCGATGATGTGATCAACGTTTCCGGTCATCGTTTGTCCACCGGTGAAATGGAAGACCTGGTCGCCCGCCACCCGGCGGTAGCGGAGTGTGCTGTGATCGGTGTGCATGACGAGATCaa         <  3:120684/149‑1 (MQ=255)
                                                                                                                           gatgatGGTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCAACGTTTCCGGTCATCGTTTGTCCACCGGTGAAATGGAAGACCTGGTCGCCCGCCACCCGGCGGTAGCGGAGTGTGCTGTGATCGGTGTGCATGACGAGATCaa         <  3:331023/149‑1 (MQ=255)
                                                                                                                              gatgGTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCAACGTTTCCGGTCATCGTTTGTCGACCGGTGATATGGAAGAGCTGGTCGCCCGCCACCCGGCGGTAGCGGAGTGTGCTGTGATCGGTGTGCATGACGAGATCAAggg      >  2:223101/1‑149 (MQ=255)
                                                                                                                               atgGTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCAACGTTTCCGGTCATCGTTTGTCCACCGGTGAAATGGAAGACCTGGTCGCCCGCCACCCGGCGGTAGCGGAGTGTGCTGTGATCGGTGTGCATGACGAGATCAAGGGc     >  4:489/1‑149 (MQ=255)
                                                                                                                                  gTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCAACGTTTCCGGTCATCGTTTGTCCACCGGTGAAATGGAAGACCTGGTCGCCCGCCACCCGGCGGTAGCGGAGTGTGCTGTGATCGGTGTGCATGACGAGATCAAGGGCCAg  <  3:58605/149‑1 (MQ=255)
                                                                                                                                             atcatGGGGCGCACCGATGATGTGATCAACGTTCCCGGTCATCGTTTGTCCACCGGTGAAATGGAAGACCTGGTCGCCCGCCACCCGGCGGTAGCGGAGTGTGCTGTGATCGgtg                         <  2:82873/115‑1 (MQ=255)
                                                                                                                                             atcatGGGGCGCACCGATGATGTGATCAACGTTACCGGTCATCGTTTGTCCACCGGTGAAATGGAAGACCTGGTCGCCCGCCACCCGGCGGTAGCGGAGTGTGCTGTGATCGgtg                         >  1:82873/1‑115 (MQ=255)
                                                                                                                                                  |                                                                                                                                     
ATTGCCCTGCCATTGCCACCCGGTTGCAGTCAGACGCTGTGGGGGGATCACGAGCGCTACCTGCAGGCCTACCTGCGCACGTATCCGGGGTACTACCACACGGGCGATGGCGGCTATCTGGACGATGATGGTTTCGTCTACATCATGGGGCGCACCGATGATGTGATCAACGTTTCCGGTCATCGTTTGTCCACCGGTGAAATGGAAGACCTGGTCGCCCGCCACCCGGCGGTAGCGGAGTGTGCTGTGATCGGTGTGCATGACGAGATCAAGGGCCAG  >  NC_002947/2682761‑2683039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: