| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 90346 = | 47 (0.830) | 11 (0.210) | 11/236 | NT | 20.3% | intergenic (+21/+101) | PP_0079/PP_0080 | transcriptional regulator/hypothetical protein |
| ? | NC_002947 | 90427 = | 44 (0.860) | intergenic (+102/+20) | PP_0079/PP_0080 | transcriptional regulator/hypothetical protein | |||||
GGTGGACATGCTGGAGCTGGACTTGCACCGGAGCGAGCACCTGAACTTCGTGGTCTAGATTGCCGGGGCTGCTGCGCAGCCCATCGCGACGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTCGCGATGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/90504‑90346‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgcgatgggcTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGCTCAGCCAGCCCAGGCTCCAGCGTGCCTTCGGT > NC_002947/90427‑90572 GGTGGACATGCTGGAGCTGGACTTGCACCGGAGCGAGCACCTGAACTTCGTGGTCTAGATTGCCGGGGCTGCTGCGCAGCCCATCGCGACGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGT > 1:121724/1‑149 GGACATGCTGGAGCTGGACTTGCACCGGAGCGAGCACCTGAACTTCGTGGTCTAGATTGCCGGGGCTGCTGCGCAGCCCATCGCGACGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTCGC > 3:102678/1‑149 CATGCTGGAGCTGGACTTGCACCGGAGCGAGCACCTGAACTTCGTGGTCTAGATTGCCGGGGCTGCTGCGCAGCCCATCGCGACGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTCGCGA < 2:121724/148‑1 CTGAACTTCGTGGTCTAGATTGCCGGGGCTGCTGCGCAGCCCATCGCGACGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTC > 8:167875/1‑110 CTGAACTTCGTGGTCTAGATTGCCGGGGCTGCTGCGCAGCCCATCGCGACGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTC < 7:167875/110‑1 CCCATCGCGACGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAG > 8:243131/1‑148 CATCGCGACGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCAT > 7:183658/1‑149 GCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTC < 1:330063/105‑1 GCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTC > 2:330063/1‑105 CCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGC > 8:312487/1‑111 CCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGC < 7:312487/111‑1 ACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCC > 8:338902/1‑149 GGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCATCATGTCCACCATCCCCGCTGCGATCCTGGACAAGC < 8:183658/149‑1 CTGTGGGAGCGGCCTTGTGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGCTCAGC < 7:243131/149‑1 GGCCTTGTGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGCTCAGCCAGCCCAGGC < 7:338902/149‑1 CCTTGTGTCGCGATGGGCCGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGCTCAGCCAGCCCAGGCTC > 4:137036/1‑149 GATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCATGGACAAGCGCCGCAACGGCTCAGCCAGCCCAGGCTCCAGCGTGCCTT > 3:20430/1‑149 ATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAAGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGCTCAGCCAGCCCAGGCTCCAGCGTGCCTTC < 1:298822/149‑1 TGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGCTCAGCCAGCCCAGGCTCCAGCGTGCCTTCG < 3:136042/149‑1 GGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGCTCAGCCAGCCCAGGCTCCAGCGTGCCTTCG < 2:118610/148‑1 GGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGCTCAGCCAGCCCAGGCTCCAGCGTGCCTTCGGT < 7:189673/149‑1 GGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGCTCAGCCAGCCCAGGCTCCAGCGTGCCTTCGGT < 7:194895/149‑1 GGTGGACATGCTGGAGCTGGACTTGCACCGGAGCGAGCACCTGAACTTCGTGGTCTAGATTGCCGGGGCTGCTGCGCAGCCCATCGCGACGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTCGCGATGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/90504‑90346‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgcgatgggcTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGCTCAGCCAGCCCAGGCTCCAGCGTGCCTTCGGT > NC_002947/90427‑90572 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |