New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 789500	59 (1.040)	3 (0.060)	3/246	NT	5.1%	coding (738/1350 nt)	gdhA	NADP‑dependent glutamate dehydrogenase
	?	NC_002947	= 789524	56 (1.040)					coding (762/1350 nt)	gdhA	NADP‑dependent glutamate dehydrogenase

ACCGGTAAGGGCATGACCTATGGCGGCAGCCTGATCCGCCCGGAAGCCACCGGCTATGGCTGCGTTTACTTCGCCGAAGAAATGCTCAAGCGTCAGGACAAGCGTATCGACGGCCGCCGCGTGGCGGTGTCCGGTTCGGGCAACGTCGCCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/789348‑789500 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccagGTCCATCACCTTACGCGCAGCATACTGGGCGACGTTGCCCGAACCGGACACCGCCACGCGGCGGCCGTCGATACGCTTGTCCTGACGCTTGAGCATTTCTTCGGCGAAGTAAACGCAGCCATAGCCGGTGGCTTCCGGGCGGATCAG  <  NC_002947/789524‑789378                                                                                                                                                                                                                                                                                                              ACCGGTAAGGGCATGACCTATGGCGGCAGCCTGATCCGCCCGGAAGCCACCGGCTATGGCTGCGTTTACTTCGCCGAAGAAATGCTCAAGCGTCAGGACAAGCGTATCAACGGCCGCCGCGTGGCGGTGTCCGGTTCGGGCAACGTCG                                                                                                                                                          <  4:154144/148‑1                                            AAGCCACCGGCTATGGCTGCGTTTACTTCGCCGAAGAAATGCTCAAGCGTCAGGACAAGCGTATCGACGGCCGCCGCGTGGCGGTGTCCGGTTCGGGCAACGTCGCCCAGGTCCATCACCTTACGCGCAGCATACTGGGCGACGTTGCC                                                                                                              <  4:328029/149‑1                                                                                  ATGCTCAAGCGTCAGGACAAGCGTATCGACGGCCGCCGCGTGGCGGTGTCCGGTTCGGGCAACGTCGCCCAGGTCCATCACCTTACGCGCAGCATACTGGGCGACGT                                                                                                                  <  1:233873/107‑1                                                                                  ATGCTCAAGCGTCAGGACAAGCGTATCGACGGCCGCCGCGTGGCGGTGTCCGGTTCGGGCAACGTCGCCCAGGTCCATCACCTTACGCGCAGCATACTGGGCGACGT                                                                                                                  >  2:233873/1‑107                                                                                                                                                   CGCCCAGGTCCATCACCTTACGCGCAGCATACTGGGCGACGTTGCCCGAACCGGACACCGCCACGCGGCGGCCGTCGATACGCTTGTCCTGACGCTTGAGCATTTCTTCGGCGAAGTAAACGCAGCCATAGCCGGTGGCTTCCGGGag        >  7:110544/1‑146                                                                                                                                                   CGCCCAGGTCCATCACCTTACGCGCAGCATACTGGGCGACGTTGCCCGAACCGGACACCGCCACGCGGCGGCCGTCGATACGCTTGTCCTGACGCTTGAGCATTTCTTCGGCGAAGTAAACGCAGCCATAGCCGGTGGCTTCCGGGCGG       <  4:40663/149‑1                                                                                                                                                   CGCCCAGGTCCATCACCTTACGCGCAGCATACTGGGCGACGTTGCCCGAACCGGACACCGCCACGCGGCGGCCGTCGATACGCTTGTCCTGACGCTTGAGCATTTCTTCGGCGAAGTAAACGCAGCCATAGCCGGTGGCTTCCGGGCG        >  1:303769/1‑148                                                                                                                                                    GCCCAGGTCCATCACCTTACGCGCAGCATACTGGGCGACGTTGCCCGAACCGGACACCGCCACGCGGCGGCCGTCGATACGCTTGTCCTGACGCTTGAGCATTTCTTCGGCGAAGTAAACGCAGCCATAGCCGGTGGCTTCCGGGCGG       >  7:280714/1‑148                                                                                                                                                      CCAGGTCCATCACCTTACGCGCAGCATACTGGGCGACGTTGCCCGAACCGGACACCGCCACGCGGCGGCCGTCGATACGCTTGTCCTGACGCTTGAGCATTTCTTCGGCGAAGTAAACGCAGCCATAGCCGGTGGCTTCCGGGCGGATC    <  4:336309/149‑1                                                                                                                                                        AGGTCCATCACCTTACGCGCAGCATACTGGGCGACGTTGCCCGAACCGGACACCGCCACGCGGCGGCCGTCGATACGCTTGTCCTGACGCTTGAGCATTTCTTCGGCGAAGTAAACGCAGCCATAGCCGGTGGCTTCCGGGCGGATCAG  <  5:184369/149‑1                                                                                                                                                                                                                                                                                                              ACCGGTAAGGGCATGACCTATGGCGGCAGCCTGATCCGCCCGGAAGCCACCGGCTATGGCTGCGTTTACTTCGCCGAAGAAATGCTCAAGCGTCAGGACAAGCGTATCGACGGCCGCCGCGTGGCGGTGTCCGGTTCGGGCAACGTCGCCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/789348‑789500 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccagGTCCATCACCTTACGCGCAGCATACTGGGCGACGTTGCCCGAACCGGACACCGCCACGCGGCGGCCGTCGATACGCTTGTCCTGACGCTTGAGCATTTCTTCGGCGAAGTAAACGCAGCCATAGCCGGTGGCTTCCGGGCGGATCAG  <  NC_002947/789524‑789378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.