New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 857773	62 (1.090)	6 (0.110)	6/254	NT	9.1%	coding (1051/1443 nt)	phr	deoxyribodipyrimidine photolyase
	?	NC_002947	= 857791	59 (1.070)					coding (1033/1443 nt)	phr	deoxyribodipyrimidine photolyase

GGAAATAGGGCACCGCGTCGGTGCCGGTGGAAGCACTCCACTGCCAACCCCCGTTGTTGGCGGCCAGGTCGCCGTCTATCAGGTGGCGCATGAAGTGCCGCTCGCCCTTGCGCCAGTCAATCAGCAGGTTCTTGCTGAGGAACATGGCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/857623‑857773 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacAACCGCTTGCGCATGGTCGTGGCCATGTTCCTCAGC  <  NC_002947/857791‑857756                                                                                                                                                                                             GGAAATAGGGCACCGCGTCGGTGCCGGTGGAAGCACTCCACTGCCAACCCCCGTTGTTGGCGGCCAGGTCGCCGTCTATCAGGTGGCGCATGAAGTGCCGCTCGCCCTTGCGCCAGTCAATCAGCAGGTTCTTGCTGAGGAACATGGCC                                        >  2:122413/1‑149          GCACCGCGTCGGTGCCGGTGGAAGCACTCCACTGCCAACCCCCGTTGTTGGCGGCCAGGTCGCCGTCTATCAGGTGGCGCATGAAGTGCCGCTCGCCCTTGCGCCAGTCAATCAGCAGGTTCTTGCTGAGGAACATGGCCACAACCGCT                               >  8:168718/1‑149                         CGGTGGAAGCACTCCACTGCCAACCCCCGTTGTTGGCGGCCAGGTCGCCGTCTATCAGGTGGCGCATGAAGTGCCGCTCGCCCTTGCGCCAGTCAATCAGCAGGTTCTTGCTGAGGAACATGGCCACAACCGCTTGCGCATGGTCGTGG                <  7:168718/149‑1                           GTGGAAGCACTCCACTGCCAACCCCCGTTGTTGGCGGCCAGGTCGCCGTCTATCAGGTGGCGCATGAAGTGCCGCTCGCCCTTGCGCCAGTCAATCAGCAGGTTCTTGCTGAGGAACATGGCCACAACCGCTTGCGCATGGTCGTGGC               >  4:304372/1‑148                                       CACTGCCAACCCCCGTTGTTGGCGGCCAGGTCGCCGTCTATCAGGTGGCGCATGAAGTGCCGCTCGCCCTTGCGCCAGTCAATCAGCAGGTTCTTGCTGAGGAACATGGCCACAACCGCTTGCGCATGGTCGTGGCCATGTTCCTCAGC  <  3:304372/149‑1                                                                                        GCATGAAGTGCCGCTCGCCCTTGCGCCAGTCAATCAGCAGGTTCTTGCTGAGGAACATGGCCACAACCGCTTGCGCATGGTCGTG                 <  3:325397/85‑1                                                                                        GCATGAAGTGCCGCTCGCCCTTGCGCCAGTCAATCAGCAGGTTCTTGCTGAGGAACATGGCCACAACCGCTTGCGCATGGTCGTG                 >  4:325397/1‑85                                                                                                                                                                                             GGAAATAGGGCACCGCGTCGGTGCCGGTGGAAGCACTCCACTGCCAACCCCCGTTGTTGGCGGCCAGGTCGCCGTCTATCAGGTGGCGCATGAAGTGCCGCTCGCCCTTGCGCCAGTCAATCAGCAGGTTCTTGCTGAGGAACATGGCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/857623‑857773 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacAACCGCTTGCGCATGGTCGTGGCCATGTTCCTCAGC  <  NC_002947/857791‑857756

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.