New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1181587	51 (0.900)	4 (0.070)	4/250	NT	7.9%	coding (640/1407 nt)	cumA	multicopper oxidase
	?	NC_002947	= 1181632	44 (0.810)					coding (685/1407 nt)	cumA	multicopper oxidase

GCTGATCGTCGAGGAACGTGAACCCACCGGGTTCCAGCATGAGCGTACGCTGAGCCTGAAGAACTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1181436‑1181587 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccaCCTGGCCGGCCGGCAGCTCGGTGATCGAGTCGGCCTGGCCATTGATGGTGATCAACCGCCCGGCAGTGCCGTTGCGCGCGGCCTCGCGCGGGATGCTGAAAGGCAGCCATGCGCCCTGCTCGTCCACATGCCAGTTCTTCAGGCTCAG  <  NC_002947/1181632‑1181485                                                                                                                                                                                                                                                                                                              GCTGATCGTCGAGGAACGTGAACCCACCGGGTTCCAGCATGAGCGTACGCTGAGCCTGAAGAACTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCA                                                                                                                                                         <  2:280147/149‑1                  GTGAACCCACCGGGTTCCAGCATGAGCGTACGCTGAGCCTGAAGAACTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCA                                                                                                                                                         <  3:310859/132‑1                  GTGAACCCACCGGGTTCCAGCATGAGCGTACGCTGAGCCTGAAGAACTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCA                                                                                                                                                         >  4:310859/1‑132                                   CAGCATGAGCGTACGCTGAGCCTGAAGAACTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCACCTGGCCGGCCGGCAGCTCGGTGATCGAGT                                                                                                                        <  5:238907/148‑1                                      CATGAGCGTACGCTGAGCCTGAAGAACTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCACCTGGCCGGCCGGCAGCTCGGTGATCGAGTCGGC                                                                                                                    >  6:369116/1‑149                                                     AGCCTGAAGAACTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCACCTGGCCGGCCGGCAGCTCGGTGATCGAGTCGGCCTGGCCATTGATGG                                                                                                      <  5:340351/148‑1                                                        CTGAAGAACTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCACCTGGCCGGCCGGCAGCTCGGTGATCGAGTCGGCCTGGCCATTGATGGTGAT                                                                                                  <  5:369116/149‑1                                                                                                                                                    CACCACCTGGCCGGCCGGCAGCTCGGTGATCGAGTCGGCCTGGCCATTGATGGTGATCAACCGCCCGGCAGTGCCGTTGCGCGCGGCCTCGCGCGGGATGCTGAAAGGCAGCCATGCGCCCTGCTCGTCCACATGCCAGTTCTTCAGGC      <  7:266880/149‑1                                                                                                                                                       CACCTGGACGGCCGGCAGCTCGGTGATCGAGTCGGCCTGGCCATTGATGGTGATCAACCGCCCGGCAGTGCCGTTGCGCGCGGCCTCGCGCGGGATGCTGAAAGGCAGCCATGCGCCCTGCTCGTCCACATGCCACTTCTACAGGCT     >  3:254908/1‑147                                                                                                                                                        ACCTGGCCGGCCGGCAGCTCGGTGATCGAGTCGGCCTGGCCATTGATGGTGATCAACCGCCCGGCAGTGCCGTTGCGCGCGGCCTCGCGCGGGATGCTGAAAGGCAGCCATGCGCCCTGCTCGTCCACATGCCAGTTCTTCAGGCTCAG  <  1:194526/149‑1                                                                                                                                                                                                                                                                                                              GCTGATCGTCGAGGAACGTGAACCCACCGGGTTCCAGCATGAGCGTACGCTGAGCCTGAAGAACTGGCATGTGGACGAGCAGGGCGCATGGCTGCCTTTCAGCATCCCGCGCGAGGCCGCGCGCAACGGCACTGCCGGGCGGTTGATCACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1181436‑1181587 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccaCCTGGCCGGCCGGCAGCTCGGTGATCGAGTCGGCCTGGCCATTGATGGTGATCAACCGCCCGGCAGTGCCGTTGCGCGCGGCCTCGCGCGGGATGCTGAAAGGCAGCCATGCGCCCTGCTCGTCCACATGCCAGTTCTTCAGGCTCAG  <  NC_002947/1181632‑1181485

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.