New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 1296790 | NA (NA) | 4 (0.070) | 4/246 | NT | NA | intergenic (‑543/‑23) | nhaA‑I/PP_1133 | Na(+)/H(+) antiporter NhaA/transposase |
? | NC_002947 | = 1296814 | NA (NA) | coding (2/1329 nt) | PP_1133 | transposase |
CAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1296637‑1296790 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgccATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGCA < NC_002947/1296814‑1296667 CAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGC < 3:359597/149‑1 AGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCG > 8:287385/1‑149 AGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCG > 1:323059/1‑149 AGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCG > 4:356228/1‑149 AGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCG > 4:192095/1‑149 AGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCG > 2:245767/1‑149 AGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCG > 3:244711/1‑149 AGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGAGTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCG > 4:60658/1‑149 GAGTTCGTAGCCAGCTCTGGTGTGTGTCTGCACAACCGAGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGC < 4:77009/149‑1 AGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCG > 2:255108/1‑149 AGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCG > 3:344637/1‑149 ATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCGCC > 6:93478/1‑149 ATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCGCC > 6:38356/1‑149 TCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCGCC > 8:52170/1‑148 TCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCGCC < 7:289535/148‑1 CACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGC > 6:295937/1‑133 CACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGC < 5:295937/133‑1 CCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCG < 1:348201/149‑1 GCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGG < 2:342103/149‑1 GAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCGC < 8:278736/108‑1 GAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCGC > 7:278736/1‑108 CACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGC < 6:158143/78‑1 CACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGC > 5:158143/1‑78 GCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGACTCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGGTCACTCTCCTACGCGG < 6:95650/148‑1 GCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGG > 6:117554/1‑149 GCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGG < 7:15308/148‑1 GCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGG < 5:123765/148‑1 GCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGG < 1:74061/148‑1 GCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGG < 8:271563/148‑1 GCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGG < 3:221924/148‑1 CGCGCCATTATGAATCCTCTCAGGATATAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTGCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGT < 8:237574/149‑1 CGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGT < 3:155440/149‑1 CGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGT < 7:25679/149‑1 CGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGT < 1:215016/149‑1 CGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGT < 3:100110/149‑1 CGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGT < 2:181601/149‑1 CGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGAT < 1:201629/132‑1 CGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGAT > 2:201629/1‑132 GCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTG > 6:99734/1‑149 CGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGT < 5:99734/149‑1 CGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTAACAGCTGAATCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGT < 6:69497/149‑1 CCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGC < 1:24809/149‑1 CCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGC < 4:263285/149‑1 CCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGC < 2:109963/149‑1 CCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGC < 1:334490/149‑1 CCATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTG > 8:137748/1‑148 CATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACTGTGGCGAAAGGGTTCACTCTCTCAAACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGCA < 8:252284/149‑1 CATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGCA < 7:319643/149‑1 CATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGC < 2:75985/140‑1 CATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGC > 1:75985/1‑140 CATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCT > 4:321812/1‑62 CATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCT < 3:321812/62‑1 CAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGTGAACCCTTTCGCCACCGTGTGCCCCGCGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1296637‑1296790 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgccATGATGAATCCTCGCAGGATAAAGGGCGCGCGGGGCACACGGTGGCGAAAGGGTTCACTCTCTCATACGTGGTCACAGCTGAATCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGCA < NC_002947/1296814‑1296667 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |