New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1297202	NA (NA)	5 (0.090)	5/248	NT	NA	coding (390/1329 nt)	PP_1133	transposase
	?	NC_002947	= 1297219	NA (NA)					coding (407/1329 nt)	PP_1133	transposase

TCTCAGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCCAGTGGATCTGGCAGCTGATGACTCATGGACTGCTCAGAGGCGCATTCCGCCCCGATGATCTGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1297049‑1297202 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgaccAATGACCGGACGCAGCAGGTCAGATCATCGGGGCGGAATGCGCCTCTGAGCAGTCCATGAGTCATCAGCTGCCAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGATAAA  <  NC_002947/1297219‑1297072                                                                                                                                                                                                                                                                                                                TCTCAGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCCAGTGGATCTGGCAGCTGATGACTCATGGACTGCTCAGAGGCGCATTCCGCCCCGATGATC                                                                                                                                                           >  5:15807/1‑149  CTCAGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCCAGTGGATCTGGCAGCTGATGACTCATGGACTGCTCAGAGGCGCATTCCGCCCCGATGATC                                                                                                                                                           <  5:339800/148‑1  CTCAGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCCAGTGGATCTGGCAGCTGATGACTCATGGACTGCTCAGAGGCGCATTCCGCCCCGATGATC                                                                                                                                                           <  4:98921/148‑1  CTCAGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCCAGTGGATCTGGCAGCTAATGACTCATGGACTGCTCAGAGGCGCATTCCGCCCCGATGATC                                                                                                                                                           <  8:193036/148‑1   TCAGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCCAGTGGATCTGGCAGCTGATGACTCATGGACTGCTCAGAGGCGCATTCCGCCCCGATGATCTG                                                                                                                                                         >  1:200318/1‑149   TCAGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCCAGTGGATCTGGCAGCTGATGACTCATGGACTGCTCAGAGGCGCATTCCGCCCCGATGATCT                                                                                                                                                          >  8:125550/1‑148   TCAGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCCAGTGGATCTGGCAGCTGATGACTCATGGACTGCTCAGAGGCGCATTCCGCCCCGATGATCT                                                                                                                                                          >  8:285440/1‑148   TCAGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCCAGTGGATCTGGCAGCTGATGACTCATGGACTGCTCAGAGGCGCATTCCGCCCCGATGATCT                                                                                                                                                          >  8:152979/1‑148   TCAGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCCAGTGGATCTGGCAGCTGATGACTCATGGACTGCTCAGAGGCGCATTCCGCCCCGATGATCT                                                                                                                                                          >  8:187127/1‑148    CAGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCCAGTGGATCTGGCAGCTGATGACTCATGGACTCCTCAGAGGCGCATTCCGCCCCGATGATCTGA                                                                                                                                                        >  2:60465/1‑149     AGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCCAGTGGATCTGGCAGCTGATGACTCATGGACTGCTCAGAGGCGCATTCCGCCCCGATGATCTGAC                                                                                                                                                       <  1:170040/149‑1     AGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCCAGTGGATCTGGCAGCTGATGACTCATGGACTGCTCAGAGGCGCATTCCGCCCCGATGATCTGAC                                                                                                                                                       >  5:93458/1‑149     AGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCCAGTGGATCTGGCAGCTGATGACTCATGGACTGCTCAGAGGCGCATTCCGCCCCGATGATCTGAC                                                                                                                                                       <  2:117980/149‑1     AGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCCAGTGGATCTGGCAGCTGATGACTCATGGACTGCTCAGAGGCGCATTCCGCCCCGATGATCTGAC                                                                                                                                                       <  4:184033/149‑1     AGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCCAGTGGATCTGGCAGCTGATGACTCATGGACTGCTCAGAGGCGCATTCCGCCCCGATGATCTGA                                                                                                                                                        >  1:164882/1‑148     AGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCCAGTGGATCTGGCAGCTGATGACTCATGGACTGCTCAGAGGCGCATTCCGCCCCGATGATCT                                                                                                                                                          <  7:285440/146‑1     AGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTCCTGGATTGCCAGTGGATCTGGCAGCTGATGACTCATGGACTGCTCAGAGGCGCATTCCGCCCCGATGATCT                                                                                                                                                          <  3:130227/146‑1      GCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCCAGTGGATCTGGCAGCTGATGACTCATGGACTGCTCAGAGGCGCATTCCGCCCCGATGATCTGACC                                                                                                                                                      >  4:124992/1‑149      GCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCCAGTGGATCTGGCAGCTGATGACTCATGGACTGCTCAGAGGCGCATTCCGCCCCGATGATCT                                                                                                                                                          <  8:286047/145‑1      GCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCCAGTGGATCTGGCAGCTGATGACTCATGGACTGCTCAGAGGCGCATTCCGCCCCGATGATCT                                                                                                                                                          >  7:286047/1‑145                        TTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCCAGTGGATCTGGCAGCTGATGACTCATGGACTGCTCAGAGGCGCATTCCGCCCCGATGATCTGACCAATGACCGGACGCAGCAG                                                                                                                                    >  1:306751/1‑149                                GTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCCAGTGGATCTGGCAGCTGATGACTCATGGACTGCTCAGAGGCGCATTCCGCCCCGATGATC‑‑‑‑‑‑‑TGACCGGACGCAGCAGGTCAGATCATCGGG                                                                                                                      <  1:312399/148‑1                                    ATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCCAGTGGATCTGGCAGCTGATGACTCATGGACTGCTCAGAGGCGCATTCCGCCCCGATGATCTGACCAATGACCGGACGCAGCAGGTCAGATCATCG                                                                                                                        <  2:306751/149‑1                                        CAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCCAGTGGATCTGGCAGCTGATGACTCATGGACTGCTCAGAGGCGCATTCCGCCCCGATGATCTGAC                                                                                                                                                       >  5:164043/1‑114                                        CAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCCAGTGGATCTGGCAGCTGATGACTCATGGACTGCTCAGAGGCGCATTCCGCCCCGATGATCTGAC                                                                                                                                                       <  6:164043/114‑1                                                                                                                          CTCAGAGGCGCATTCCGCCCCGATGATCTGACCAATGACCGGACGCAGCAGGT                                                                                                                                  <  2:359749/53‑1                                                                                                                          CTCAGAGGCGCATTCCGCCCCGATGATCTGACCAATGACCGGACGCAGCAGGT                                                                                                                                  >  1:359749/1‑53                                                                                                                                                    caTGACCATTGACCGGAAGCAGCAGGTAAGATCATCGGGGCGGAATGCGCCTCTGAGCAGTCCATGAGTCATCAGCTGCCAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGA        <  8:56102/147‑1                                                                                                                                                     CTGACCAATGACCGGACGCAGCAGGTCAGATCATCGGGGCGGAATGCGCCTCTGAGCAGTCCATGAGTCATCAGCTGCCAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGAC          >  7:114771/1‑146                                                                                                                                                      TGACCAATGACCGGACGCAGCAGGTCAGATCATCGGGGCGGAATGCGCCTCTGAGCAGTCCATGAGTCATCAGCTGCCAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAG       >  8:195640/1‑148                                                                                                                                                      TGACCAATGACCGGACGCAGCAGGTCAGATCATCGGGGCGGAATGCGCCTCTGAGCAGTCCATGAGTCATCAGCTGCCAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGAC          >  5:95247/1‑145                                                                                                                                                       GACCAATGACCGGACGCAGCAGGTCAGATCATCGGGGCGGAATGCGCCTCTGAGCAGTCCATGAGTCATCAGCTGCCAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGA      >  1:268089/1‑148                                                                                                                                                        ACCAATGACCGGACGCAGCAGGTCAGATCATCGGGGCGGAATGCGCCTCTGAGCAGTCCATGAGTCATCAGCTGCCAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGAT     <  1:127515/148‑1                                                                                                                                                        ACCAATGACCGGACGCAGCAGGTCAGATCATCGGGGCGGAATGCGCCTCTGAGCAGTCCATGAGTCATCAGCTGCCAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGAT     >  1:222433/1‑148                                                                                                                                                        ACCAATGACCGGACGCAGCAGGTCAGATCATCGGGGCGGAATGCGCCTCTGAGCAGTCCATGAGTCATCAGCTGCCAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGAT     <  1:245338/148‑1                                                                                                                                                        ACCAATGACCGGACGCAGCAGGTCAGATCATCGGGGCGGAATGCGCCTCTGAGCAGTCCATGAGTCATCAGCTGCCAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGAT     >  8:110452/1‑148                                                                                                                                                         CCAATGACCGGACGCAGCAGGTCAGATCATCGGGGCGGAATGCGCCTCTGAGCAGTCCATGAGTCATCAGCTGCCAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGATAA   <  6:97950/149‑1                                                                                                                                                         CCAATGACCGGACGCAGCAGGTCAGATCATCGGGGCGGAATGCGCCTCTGAGCAGTCCATGAGTCATCAGCTGCCAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGATAA   <  6:324179/149‑1                                                                                                                                                          CAATGACCGGACGCAGCAGGTCAGATCATCGGGGCGGAATGCGCCTCTGAGCAGTCCATGAGTCATCAGCTGCCAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGATAAA  >  7:335543/1‑149                                                                                                                                                          CAATGACCGGACGCAGCAGGTCAGATCATCGGGGCGGAATGCGCCTCTGAGCAGTCCATGAGTCATCAGCTGCCAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGATAA   >  6:312790/1‑148                                                                                                                                                          CAATGACCGGACGCAGCAGGTCAGATCATCGGGGCGGAATGCGCCTCTGAGCAGTCCATGAGTCATCAGCTGCCAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGC                <  8:172144/135‑1                                                                                                                                                          CAATGACCGGACGCAGCAGGTCAGATCATCGGGGCGGAATGCGCCTCTGAGCAGTCCATGAGTCATCAGCTGCCAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGC                >  7:172144/1‑135                                                                                                                                                          CAATGACCGGACGCAGCAGGTCAGATCATCGGGGCGGAATGCGCCTCTGAGCAGTCCATGAGTCATCAGCTGCCAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGG                 >  8:213884/1‑134                                                                                                                                                          CAATGACCGGACGCAGCAGGTCAGATCATCGGGGCGGAATGCGCCTCTGAGCAGTCCATGAGTCATCAGCTGCCAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGG                 <  7:213884/134‑1                                                                                                                                                          CAATGACCGGACGCAGCAGGTCAGATCATCGGGGCGGAATGCGCCTCTGAGCAGTCCATGAGTCATCAGCTGCCAGATCCACTGGCAATCCAGCACATCTGATTTAC                                            >  6:30565/1‑107                                                                                                                                                          CAATGACCGGACGCAGCAGGTCAGATCATCGGGGCGGAATGCGCCTCTGAGCAGTCCATGAGTCATCAGCTGCCAGATCCACTGGCAATCCAGCACATCTGATTTAC                                            <  5:30565/107‑1                                                                                                                                                          CAATGACCGGACGCAGCAGGTCAGATCATCGGGGCGGAATGCGCCTCTGAGCAGTCAATGAGTCATCAGCTGCCAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGATAAA  >  6:46742/1‑149                                                                                                                                                                                                                                                                                                                TCTCAGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCCAGTGGATCTGGCAGCTGATGACTCATGGACTGCTCAGAGGCGCATTCCGCCCCGATGATCTGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1297049‑1297202 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgaccAATGACCGGACGCAGCAGGTCAGATCATCGGGGCGGAATGCGCCTCTGAGCAGTCCATGAGTCATCAGCTGCCAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGATAAA  <  NC_002947/1297219‑1297072

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.