New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1821299	NA (NA)	4 (0.070)	3/246	NT	NA	coding (1062/1422 nt)	PP_1624	group II intron‑encoding maturase
	?	NC_002947	= 2070624	NA (NA)					coding (998/1422 nt)	PP_1846	group II intron‑encoding maturase

AGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1821145‑1821299 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcagcCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCTTCAGACGTTCTCTCAGGAAGCGCTCGACGCTGACCAACACCCGTTCGCCGGCCCGGG  <  NC_002947/2070624‑2070477                                                                                                                                                                                                                                                                                                                 AGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTG                                                                                                                                                            <  5:372734/149‑1    TGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCG                                                                                                                                                          >  4:347959/1‑148      ACGGTGAACATGATGAAATGCCAAGTGGCAAGGGCGTGGAAGTGCGTCTACCTAGGCTATGGGATGAGCTGGCACCTGCAGCCAAGTCTGCGCGTGGCATGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCA                                                                                                                                                        <  1:363485/148‑1      ACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGGGCAGAATGCTGCTGCGCcg                                                                                                                                                       >  8:228538/1‑147      ACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAG                                                                                                                                                       >  4:42069/1‑149      ACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCA                                                                                                                                                        <  3:198752/148‑1       CGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGCGCTGGCACCAGCAGCCAAGACTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGC                                                                                                                                                      <  3:188757/149‑1                                                                                        CAAGACTGCGCGTGGCAAGGATGAGCCTTGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGTCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTT                                                                      >  1:204484/1‑148                                                                                          aggCTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGCCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCAC                                                                   >  2:316579/4‑149                                                                                              TGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGTCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTAGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTCTTCACCGT                                                                >  8:170211/1‑148                                                                                                                 CCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGCCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCTTCAGACGTTCTCTCA                                            <  1:316579/149‑1                                                                                                                                                     caGCAGCCAAGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCTTCAGACGTTCTCTCAG                                           <  5:154283/112‑1                                                                                                                                                     caGCAGCCAAGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCTTCAGACGTTCTCTCAG                                           >  6:154283/3‑114                                                                                                                                                     GCGCAGCCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCTTCAGACGTTCTCTCAGGAAGCGCTCGACGCTGACC                        >  7:42735/1‑133                                                                                                                                                     GCGCAGCCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCTTCAGACGTTCTCTCAGGAAGCGCTCGACGCTGACC                        <  8:42735/133‑1                                                                                                                                                       GCAGCCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCTTCAGACGTTCTCTCAGGAAGCGCTCGACGCTGACCAACACCCGTTCGCCGGCC      >  6:330774/1‑149                                                                                                                                                           CCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCTTCAGACGTTCTCTCAGGAAGCGCTCGACGCTGACCAACACCCGTTCGCCGGCCCGGG  <  5:295111/149‑1                                                                                                                                                           CCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCTTCAGACGTTCTCTCAGGAAGCGCTCGACGCTGACCAACACCCGTTCGCCGGCCCGGG  >  4:206460/1‑149                                                                                                                                                                                                                                                                                                                 AGCTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1821145‑1821299 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcagcCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCTTCAGACGTTCTCTCAGGAAGCGCTCGACGCTGACCAACACCCGTTCGCCGGCCCGGG  <  NC_002947/2070624‑2070477

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.