| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2412941 | 109 (1.920) | 9 (0.170) | 6/244 | NT | 9.2% | intergenic (+205/‑216) | rlmM/PP_2114 | 23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase |
| ? | NC_002947 | = 2528972 | 76 (1.430) | intergenic (+99/‑308) | PP_2217/PP_2218 | enoyl‑CoA hydratase/transposase | |||||
TGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGC‑GTACTCCCGGGAGCAAGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2412786‑2412941‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaagcccTACGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTATCGCGCACTTAGAAGCAAAAGCCACGGCAACGGCAACGGCAACGAACCGAGTCTGATCAACGGTCCTTGAACTGTGCCTCACGCTTGGCGATGAATGCGGCCATG < NC_002947/2528972‑2528825 TGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGC‑GTACTCCCGGGAG > 8:320193/1‑149TGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGC‑GTACTCCCGGGAG > 3:149412/1‑149TGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGC‑GTACTCCCGGGAG > 3:355238/1‑149 TTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGC‑GTACTCCCGGGAGC > 3:325416/1‑148 GCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGC‑GTACTCCCGGGAGCAA < 1:214468/148‑1 CTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGC‑GTACTCCCGGGAGCAAGC > 8:306500/1‑149 TTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGC‑GTACTCCCGGGAGCAAGCC > 5:170954/1‑149 GGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGC‑GTACTACCGGGAGCAAGCCCTACGCACGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTAac > 7:186942/1‑147 GCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGC‑GTACTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTATCGCGCCCTAAGAAG > 6:184012/1‑149 GAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGACACATGGATGGGGCATGCAGCGC‑GTACTCCC‑TTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTCGCAATCTGCGTCTCCTGAAATACCGCGCGCTTACAAGCAAAAG > 5:321969/1‑148 GGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGC‑GTACTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTATCGCGCACTTAGAAGCAAAAGCCACGGCAACGGCAACGG > 7:138823/1‑148 GGATGCCCGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCACTTAGAAGCAAAAGCAAAAGCAACGGCAACGGC > 6:87423/1‑148 CGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGC‑GTACTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATATGCGTCGCCTGAACTATCGCGCACTTAGAAGCAAAAGCCACGGCAACGGCAACGGCAACGAAC > 6:277306/1‑149 GCCCCATGGATGGGGCCTGCAGCGC‑GTACTCCC‑TCCGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTATCGCGCACTTAGAAGCAAAAGCCACGGCAACGGCAACGGCAACGAACCGAGTCTGATCAACG > 3:18463/1‑149 CATGGATGGGGCCTGCAGCGC‑GTACTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTATCGCGCACTTAGAAGCAAAAGCCACGGCAACGGCAACGGCAACGAACCGAGTCTGATCAACGGTC < 8:138823/149‑1 TGGGGCCTGCAGCGC‑GTACTCCCGGGAGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTATCGCGCACTTAGAAGCAAAAGCCACGGCAACGGCAACGGCAACTAACCGAGTCTGATCAACGGTCCTTGAA < 5:277306/149‑1 GCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCTTCGCCTGAAGTTTCGCGCAGTTAGAAGCAAAAGCCTCGGCAACGGCAACGGCAACGAACCGTGTCTGATCAACGGTC < 5:8973/116‑1 CAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTATCGCGCACTTAGAAGCAAAAGCCACGGCAACGGCAACGGCAACGAACCGAGTCTGATCAACGGTCCTTGAACTGTGCCTCACG > 2:9593/1‑133 CAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTATCGCGCACTTAGAAGCAAAAGCCACGGCAACGGCAACGGCAACGAACCGAGTCTGACCAACGGTCCTTGAACTGTGCCTCACG < 1:9593/133‑1 CAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTATCGCGCACTTAGAAGCAAAAGCCACGGCAACG < 6:49718/82‑1 CAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTATCGCGCACTTAGAAGCAAAAGCCACGGCAACG > 5:49718/1‑82 AAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTATCGCGCACTTAGAAGCAAAAGCCACGGCAACGGCAACGGCAACGAACCGAGTCTGATCAACGGTCCTTGAACTGTGCCTCACGCTTGGCGATGAATGCGG < 5:79098/149‑1 CCTACGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTATCGCGCACTTAGAAGCAAAAGCCACGGCAACGGCAACGGCAACGAACCGAGTCTGATCAACGGTCCTTCAACTGTGCCTCACGCTTGGCGATGAATCCGGCCAT > 6:198353/1‑149 CTACGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTATCGCGCACTTAGAAGCAAAAGCCACGGCAACGGCAACGGCAACGAACCGAGTCTGATCAACGGTCCTTGAACTGTGCCTCACGCTTGGCGATGAATGCGGCCATG > 2:21955/1‑149 TGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGC‑GTACTCCCGGGAGCAAGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2412786‑2412941‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaagcccTACGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTATCGCGCACTTAGAAGCAAAAGCCACGGCAACGGCAACGGCAACGAACCGAGTCTGATCAACGGTCCTTGAACTGTGCCTCACGCTTGGCGATGAATGCGGCCATG < NC_002947/2528972‑2528825 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |