New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2427597 =	59 (1.040)	4 (0.070)	4/248	NT	6.7%	coding (131/513 nt)	PP_5503	CheA signal transduction histidine kinase
	?	NC_002947	2427641 =	56 (1.040)					coding (87/513 nt)	PP_5503	CheA signal transduction histidine kinase

CTACCCCACGCGCGGGGACTTGATGATGGACACTGCCTTATCGTTCGATGACGCCCTGCAGGGCTTTCTGCTGGATGCCCAGGTACTGCTGACCCAGGCCCAGGAATGCCTGCAGCATCTGGAGCTTATAGACAATGACCCGGATGCCTGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2427749‑2427597 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcagGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGCCCTGCAGGGCGTCATCGAACGATAAGGCAGTGTCCATCATCAAGTCCCCGCGCGTGGGGTAGGCGCAGGGGGCGGGCACGCCGAAACGATAGCTAGCAA  >  NC_002947/2427641‑2427786                                                                                                                                                                                                                                                                                                             CTACCCCACGCGCGGGGACTTGATGATGGACACTGCCTTATCGTTCGATGACGCCCTGCAGGGCTTTCTGCTGGATGCCCAGGTACTGCTGACCCAGGCCCAGGAATGCCTGCAGCATCTGGAGCTTATAGACAATGACCCGGATGCCT                                                                                                                                                        >  6:100391/1‑149    CCCCACGCGCGGGGACTTGATGATGGACACTGCCTTATCGTTCGATGACGCCCTGCAGGGCTTTCTGCTGGATGCCCAGGTACTGCTGACCCAGGCCCAGGAATGCCTGCAGCATCTGGAGCTTATAGACAATGACCCGGATGCCTG                                                                                                                                                       >  6:264482/1‑147                                                                                                        GAATGCCTGCAGCATCTGGAGCTTATAGACAATGACCCGGATGCCTGCAGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGCCCTGCAGGGCGTCATCGAACGATAAGGCAGTGTCCATCATCAAGTCCCCGCG                                                 >  7:240385/1‑149                                                                                                             CCTGCAGCATCTGGAGCTTATAGACAATGACCCGGATGCCTGCAGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGCCCTGCAGGGCGTCATCGAACGATAAGGCAGTGTCCATCATCAAGTCCCCGCGCGTGG                                            <  8:240385/149‑1                                                                                                             CCTGCAGCATCTGGAGCTTATAAACAATGACCCGGATGCCTGCAGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGCCCTGCAGGGCGTCATCGAACGATAAGGCAGTGTCCATCATCAAGTCCACGCGCGTGG                                            >  7:55030/1‑149                                                                                                                                              GGATGCCTGCAGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGCCCTGCAGGGCGTCATCGAACGATAAGGCAGTGTCCATCATCAAGTCCCCGCGCGTGGGGTAGGCGCAGGGGGCGGGCACGCCGAAACGAT           <  8:55030/149‑1                                                                                                                                                    CTGCAGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGCCCTGCAGGGCGTCATCGAACGATAAGGCAGTGTCCATCATCAAGTCCCCGCGCGTGGGGTAGGCGCAGGGGGCGGGCACGCCGAAACGATAGCTA      <  1:142168/148‑1                                                                                                                                                     TGCAGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGCCCTGCAGGGCGTCATCGAACGATAAGGCAGTGTCCATCATCAAGTCCCCGCGCGTGGGGTAGGCGCAGGGGGCGGGCACGCCGAAACGATAGCTAG     >  5:9164/1‑148                                                                                                                                                     TGCAGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGCCCTGCAGGGCGTCATCGAACGATAAGGCAGTGTCCATCATCAAGTCCCCGCGCGTGGGGTAGGCGCAGGGGGCGGGCACGCCGAAACGATAGCTAG     >  6:151816/1‑148                                                                                                                                                     TGCAGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGCCCTGCAGGGCGTCATCGAACGATAAGGCAGTGTCCATCATCAAGTCCCCGCGCGTGGGGTAGGCGCAGGGGGCGGGCACGCCGAAACGATAGCTAG     >  6:156351/1‑148                                                                                                                                                     TGCAGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGCCCTGCAGGGCGTCATCGAACGATAAGGCAGTGTCCATCATCAAGTCCCCGCGCGTGGGGTAGGCGCAGGGGGCGGGCACGCCGAAACGACAGCTAG     >  6:230695/1‑148                                                                                                                                                      GCAGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGCCCTGCAGGGCGTCATCGAACGATAAGGCAGTGTCCATCATCAAGTCCCCGCGCGTGGGGTAGGCGCAGGGGGCGGGCACGCCGAAACGATAGCTAG     <  6:218212/147‑1                                                                                                                                                      GCAGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGCCCTGCAGGGCGTCATCGAACGATAAGGCAGTGTCCATCATCAAGTCCCCGCGCGTGGGGTAGGCGCAGGGGGCGGGCACGCCGAAACGATAGCTAG     >  5:218212/1‑147                                                                                                                                                      GCAGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGCCCTGCAGGGCGTCATCGAACGATAAGGCAGTGTCCATCATCAAGTCCCCGCGCGTGGGGTAGGCGCAGGGGGCGGGCACGCCGAAA               <  7:251909/137‑1                                                                                                                                                      GCAGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGCCCTGCAGGGCGTCATCGAACGATAAGGCAGTGTCCATCATCAAGTCCCCGCGCGTGGGGTAGGCGCAGGGGGCGGGCACGCCGAAA               >  8:251909/1‑137                                                                                                                                                       CAGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGCCCTGCAGGGCGTCATCGAACGATAAGGCAGTGTCCATCATCAAGTCCCCGCGCGTGGGGTAGGCGCAGGGGGCGGGCACGCCGAAACGATAGCTAGCA   >  8:224711/1‑148                                                                                                                                                        AGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGCCCTGCACGGCGTCATCGAACCATAAGGCAGTGTCCATCATCAAGTCCCCCCGCTTGGGGTAGGCGCATGCGGCGGCCACGACGAAACCATAGCTAGCAA  >  2:296741/1‑148                                                                                                                                                                                                                                                                                                             CTACCCCACGCGCGGGGACTTGATGATGGACACTGCCTTATCGTTCGATGACGCCCTGCAGGGCTTTCTGCTGGATGCCCAGGTACTGCTGACCCAGGCCCAGGAATGCCTGCAGCATCTGGAGCTTATAGACAATGACCCGGATGCCTGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2427749‑2427597 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcagGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGCCCTGCAGGGCGTCATCGAACGATAAGGCAGTGTCCATCATCAAGTCCCCGCGCGTGGGGTAGGCGCAGGGGGCGGGCACGCCGAAACGATAGCTAGCAA  >  NC_002947/2427641‑2427786

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.