New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3709481	64 (1.130)	4 (0.080)	4/244	NT	6.2%	coding (916/1077 nt)	paaE	ring 1,2‑phenylacetyl‑CoA epoxidase reductase subunit
	?	NC_002947	= 3709517	60 (1.130)					coding (880/1077 nt)	paaE	ring 1,2‑phenylacetyl‑CoA epoxidase reductase subunit

CAGCACATACCCGGCCGCCACTTCGTAGTCTTCGAGGGCATGGTTGCTGTCCATCTCCACTTCGCCCTCGATCACTCGGCACTTGCAGGTGGAGCACACGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3709377‑3709481 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgccggcAATGCCATCGGCGCCGAGCTGCCCTACTCGTGCAAGGCCGGCGTGTGCTCCACCTGCAAGTGCCGAGTGATCGAGGGCGAAGTGGAGATGGACAGCAACCATGCCCTCGAAGACTACGAAGTGGCGGCCGGGTATGTGCTGTCGTGCC  <  NC_002947/3709517‑3709370                                                                                                                                                                                                                                                               CAGCACATACCCGGCCGCCACTTCGTAGTCTTCGAGGGCATGGTTGCTGTCCATCTCCACTTCGCCCTCGATCACTCGGCACTTGCAGGTGGAGCACACGCCGGCAATGCCATCGGCGCCGAGCTGCCCTACTCGTGCAAGGCCGGCGT                                                                                                          <  5:241269/149‑1   GCACATACCCGGCCGCCACTTCGTAGTCTTCGAGGGCATGGTTGCTGTCCATCTCCACTTCGCCCTCGATCACTCGGCACTTGCAGGTGGAGCACACGCCGGCAATGCCATCGGCGCCGAGCTGCCCTACTCGTGCAAGGCCGGCGTGT                                                                                                        <  7:29450/149‑1        TACCCGGCCGCCACTTCGTAGTCTTCGAGGGCATGGTTGCTGTCCATCTCCACTTCGCCCTCGATCACTCGGCACTTGCAGGTGGAGCACACGCCGGCAATGCCATCGGCGCCGAGCTGCCCTACTCGTGCAAGGCCGGCGTGTG                                                                                                       <  1:149859/145‑1        TACCCGGCCGCCACTTCGTAGTCTTCGAGGGCATGGTTGCTGTCCATCTCCACTTCGCCCTCGATCACTCGGCACTTGCAGGTGGAGCACACGCCGGCAATGCCATCGGCGCCGAGCTGCCCTACTCGTGCAAGGCCGGCGTGTG                                                                                                       >  2:149859/1‑145                                                                                                       GGCAATGCCATCGGCGCCGAGCTGCCCTACTCGTGCAAGGCCGGCGTGTGCTCCACCTGCAAGTGCCGAGTGATCGAGGGCGAAGTGGAGATGGACAGCAACCATGCCCTCGAAGACTACGAAGTGGCGGCCGGGTATGTGCTGTCGTG    >  2:301008/1‑149                                                                                                        GCAATGCCATCGGCGCCGAGCTGCCCTACTCGTGCAAGGCCGGCGTGTGCTCCACCTGCAAGTGCCGAGTGATCGAGGGCGAAGTGGAGATGGACAGCAACCATGCCCTCGAAGACTACGAAGTGGCGGCCGGGTATGTGCTGTCGTGC   >  2:338049/1‑149                                                                                                         CAATGCCATCGGCGCCGAGCTGCCCTACTCGTGCAAGGCCGGCGTGTGCTCCACCTGCAAGTGCCGAGTGATCGAGGGCGAAGTGGAGATGGACAGCAACCATGCCCTCGAAGACTACGAAGTGGCGGCCGGGTATGTGCTGTCGTGCC  <  4:185471/149‑1                                                                                                                                                                                                                                                               CAGCACATACCCGGCCGCCACTTCGTAGTCTTCGAGGGCATGGTTGCTGTCCATCTCCACTTCGCCCTCGATCACTCGGCACTTGCAGGTGGAGCACACGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3709377‑3709481 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgccggcAATGCCATCGGCGCCGAGCTGCCCTACTCGTGCAAGGCCGGCGTGTGCTCCACCTGCAAGTGCCGAGTGATCGAGGGCGAAGTGGAGATGGACAGCAACCATGCCCTCGAAGACTACGAAGTGGCGGCCGGGTATGTGCTGTCGTGCC  <  NC_002947/3709517‑3709370

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.