New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3733177 =	92 (1.620)	5 (0.090)	5/252	NT	5.8%	coding (64/1464 nt)	PP_3299	lipoprotein
	?	NC_002947	3733205 =	74 (1.350)					coding (36/1464 nt)	PP_3299	lipoprotein

GAACGATTGCTCTGCTGTTGAGCGCCAGTCTCACTGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3733215‑3733177 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagAGCAATCGTTCGGTAGGGAAGCATGATGATTCTCATAGACCAAGAGGAGGTGTGACCATATTATATTTTGGTCACACTCTGTCAATCAGTTCCAGGATGCTTCAAAAAT  >  NC_002947/3733205‑3733313                                                                                                                                                      GAACGATTGCTCTGCTGTTGAGCGCCAGTCTCACTGCAGAGCAATCGTTCGGTAGGGAAGCATGGTGATTCTCATAGACCAAGAGGAGGTGTGACCATATTATATTTTGGTCACACTCTGTCAATCAGTTCCAGGATGCTTCAAAAAT  >  2:95895/1‑148           TCTGCTGTTGAGCGCCAGTCTCACTGCAGAGCAATCGTTCGGTAGGGAAGCATGATGATTCTCATAGACCAAGAGGAGGTGTGACCATATTATATTTTGGTCACACTCTGTCAATCAGTTCCAGGATGCTTCAAAAA   <  2:75895/137‑1           TCTGCTGTTGAGCGCCAGTCTCACTGCAGAGCAATCGTTCGGTAGGGAAGCATGATGATTCTCATAGACAAAGAGGAGGTGTGACCATATTATATTTTGGTCACACTCTGTCAATCAGTTCCAGGATGCTTCAAAAA   >  1:75895/1‑137              GCTGTTGAGCGCCAGTCTCACTGCAGAGCAATCGTTCGGTAGGGAAGCATGATGATTCTCATAGACCAAGAGGAGGTGTGACCATATTATATTTTG                                         <  5:185143/96‑1              GCTGTTGAGCGCCAGTCTCACTGCAGAGCAATCGTTCGGTAGGGAAGCATGATGATTCTCATAGACCAAGAGGAGGTGTGACCATATTATATTTTG                                         >  6:185143/1‑96                                                                                                                                                      GAACGATTGCTCTGCTGTTGAGCGCCAGTCTCACTGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3733215‑3733177 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagAGCAATCGTTCGGTAGGGAAGCATGATGATTCTCATAGACCAAGAGGAGGTGTGACCATATTATATTTTGGTCACACTCTGTCAATCAGTTCCAGGATGCTTCAAAAAT  >  NC_002947/3733205‑3733313

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.