| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3891041 = | 72 (1.270) | 5 (0.090) | 5/246 | NT | 6.9% | coding (25/1587 nt) | PP_3435 | hypothetical protein |
| ? | NC_002947 | 3891104 = | 67 (1.250) | coding (88/1587 nt) | PP_3435 | hypothetical protein | |||||
GGCCGCACATGACCGGCAGCACGCCGACGACCCAGGGCAAGAGCGTGCGCCAGCTGAGTGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3891104‑3891041‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgcggcCTGGCCGTGATGAACTGGCAGGTCGAACGTGAAATGCAGGCCAGCAGCCACGCCACCACCCGCCAGGCGTTGGAGCACGTCGAACACATCCTCGACAACCTGTCCCGTGCCGCCAATTCGCTACTTCCACTGACTGACAGCCCA > NC_002947/3891104‑3891247 GGCCGCACATGACCGGCAGCACGCCGACGACCCAGGGCAAGAGCGTGCGCCAGCTGAGTGCGGCCTGGCCGTGATGAACTGGCAGGTCGAACGTGAAATGCAGGCCAGCAGCCACGCCACCACCCGCCAGGCGTTGGAGCACGTCGAA > 5:123122/1‑148 GCCGCACATGACCGGCAGCACGCCGACGACCCAGGGCAAGAGCGTGCGCCAGCTGAGTGCGGCCTGGCCGTGATGAACTGGCAGGTCGAATGTGAAATGCAGGCCAGCAGCCACGCCACCACCCGCCAGGCGTTGGAGCACGTCGAACA > 6:133253/1‑149 CGGCAGCACGCCGACGACCCAGGGCAAGAGCGTGCGCCGGTCATGTGCGGCCTGGCCGTGATGAACTGGCAGGTCGAACGTGAAATGCAGGCCAGCAGCCACGCCACCACCCGCCAGGCGTTGGAGCACGTCGAACACATCCTC < 3:1791/144‑1 CGGCAGCACGCCGACGACCCAGGGCAAGAGCGTGCGCCGGTCATGTGCGGCCTGGCCGTGATGAACTGGCAGGTCGAACGTGAAATGCAGGCCAGCAGCCACGCCACCACCCGCCAGGCGTTGGAGCACGTCGAACACATCCTC > 4:1791/1‑144 CGACGACCCAGGGCAAGAGCGTGCGCCAGCTGAGTGCGGCCTGGCCGTGATGAACTGGCAGGTCGAACGTGAAATGCAGGCCAGCAGCCACGCCACCACCCGCCAGGCGTTGGAGCACGTCGAACACATCCTCGACAACCTGTCCCGTG < 6:123122/149‑1 GCGTCCTGGCCGTGATGAACTGGCAGGTCGAACGTGAAATTCAGGCCAGCAGCCACGCCACCACCCGCCAGGCGTTGGAGCACGTCGAACACATCCTCGACAACCTGTCCCGTGCCGCCAATTCGCTACTTCCACTGACTGACAACCCA < 1:300638/149‑1 GCGGCCTGGCCGTGATGAACTGGCAGGTCGAACGTGAAATGCAGGCCAGCAGCCACGCCACCACCCGCCAGGCGTTGGAGCACGTCGAACACATCCTCGACAACCTGTCCCGTGCCGCCAATTCGCTACTTCCACTGACTGCCAGCCCA > 3:246514/1‑149 CGGCCTGGCCGTGATGAACTGGCAGGTCGAACGTGAAATGCAGGCCAGCAGCCACGCCACCACCCGCCAGGCGTTGGAGCACGTCGAA > 1:170005/1‑88 CGGCCTGGCCGTGATGAACTGGCAGGTCGAACGTGAAATGCAGGCCAGCAGCCACGCCACCACCCGCCAGGCGTTGGAGCACGTCGAA < 2:170005/88‑1 GGCCGCACATGACCGGCAGCACGCCGACGACCCAGGGCAAGAGCGTGCGCCAGCTGAGTGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3891104‑3891041‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgcggcCTGGCCGTGATGAACTGGCAGGTCGAACGTGAAATGCAGGCCAGCAGCCACGCCACCACCCGCCAGGCGTTGGAGCACGTCGAACACATCCTCGACAACCTGTCCCGTGCCGCCAATTCGCTACTTCCACTGACTGACAGCCCA > NC_002947/3891104‑3891247 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |