| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4173583 = | 55 (0.970) | 3 (0.060) | 3/242 | NT | 5.6% | coding (196/573 nt) | PP_3672 | hypothetical protein |
| ? | NC_002947 | 4173634 = | 50 (0.950) | coding (145/573 nt) | PP_3672 | hypothetical protein | |||||
CCAGTTGGGACAGTGAGCAGACGGTGTCGGTCAACCTGTCGGCGGTGCAGTTCAAGAACGGCGATCTGGTGCATACCGTCGCCCTCGCGCTGGCCGACTCGGGCCTGCCGCCGCAGCGGCTGGAGCTGGAAATTACCGAGTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4173726‑4173583‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgagtcggCCAGCGCGAGGGCGACGGTATGCACCAGATCGCCGTTCTTGAACTGCACCGCCGACAGGTTGACCGACACCGTCTGCTCACTGTCCCAACTGGCCGCCTCCTGGCAGGCCAGGTTCAGCGCACGGTTGCCCAGCTCGTGGATCAAC > NC_002947/4173634‑4173779 CCAGTTGGGACAGTGAGCAGACGGTGTCGGTCAACCTGTCGGCGGTGCAGTTCAAGAACGGCGATCTGGTGCATACCGTCGCCCTCGCGCTGGCCGACTCGGGCCTGCCGCCGCAGCGGCTGGAGCTGGAAATTACCGAGTC < 5:283956/142‑1CCAGTTGGGACAGTGAGCAGACGGTGTCGGTCAACCTGTCGGCGGTGCAGTTCAAGAACGGCGATCTGGTGCATACCGTCGCCCTCGCGCTGGCCGACTCGGGCCTGCCGCCGCAGCGGCTGGAGCTGGAAATTACCGAGTC > 6:283956/1‑142 GCCGACTCGGGCCTGCCGCCGCAGCGGCTGGAGCTGGAAATTACCGAGTCGGCCAGCGCGAGGGCGACGGTATGCACCAGATCGCCGTTCTTGAACTGCACCGCCGACAGGTTGACCGACACCGTCTGCTCACTGTCCCAACTGGCCGC > 7:302289/1‑149 CGACTCGGGCCTGCCGCCGCAGCGGCTGGAGCTGGAAATTACCGAGTCGGCCAGCGCGAGGGCGACGGTATGCACCAGATCGCCGTTCTTGAACTGCACCGCCGACAGGTTGACC < 5:241948/115‑1 CGACTCGGGCCTGCCGCCGCAGCGGCTGGAGCTGGAAATTACCGAGTCGGCCAGCGCGAGGGCGACGGTATGCACCAGATCGCCGTTCTTGAACTGCACCGCCGACAGGTTGACC > 6:241948/1‑115 TCGGGCCTGCCGCCGCAGCGGCGGGAGCTGGAAATTACCGA < 4:206521/41‑1 AGTCGGCCAGCGCGAGGGCGACGGTATGCACCAGATCGCCGTTCTTGAACTGCACCGCCGACAGGTTGACCGACACCGTCTGCTCACTGTCCCAACTGGCCGCCTCCTGGCAGGCCAGGTTCAGCGCACGGTTGCCCAGCTCGTGGATC < 4:214273/149‑1 GGCCAGCGCGAGGGCGACGGTATGCACCAGATCGCCGTTCTTGAACTGCACCGCCGACAGGTTGACCGACACCGTCTGCTCACTGTCCCAACTGGCCGCCTCCTGGCAGGCCAGGTTCAGCGCACGGTTGCCCAGCTCGTGGATCAAC < 7:142820/148‑1 CCAGTTGGGACAGTGAGCAGACGGTGTCGGTCAACCTGTCGGCGGTGCAGTTCAAGAACGGCGATCTGGTGCATACCGTCGCCCTCGCGCTGGCCGACTCGGGCCTGCCGCCGCAGCGGCTGGAGCTGGAAATTACCGAGTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4173726‑4173583‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgagtcggCCAGCGCGAGGGCGACGGTATGCACCAGATCGCCGTTCTTGAACTGCACCGCCGACAGGTTGACCGACACCGTCTGCTCACTGTCCCAACTGGCCGCCTCCTGGCAGGCCAGGTTCAGCGCACGGTTGCCCAGCTCGTGGATCAAC > NC_002947/4173634‑4173779 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |