New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4371726	50 (0.880)	3 (0.060)	3/230	NT	5.5%	intergenic (‑311/‑1261)	PP_5636/PP_3849	hypothetical protein/hemolysin‑type calcium‑binding protein
	?	NC_002947	= 4371778	58 (1.160)					intergenic (‑363/‑1209)	PP_5636/PP_3849	hypothetical protein/hemolysin‑type calcium‑binding protein

TTTTTTCGACCCATAAAGAAAAACCCCGCAGACGTTAATCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACCGGCGTAGACGGATTTGCAATCCGATACAAGAATCGCCGCCTCATGCCTGCCGGAAGCAATAATCAGTTCCAAAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4371569‑4371726 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatcagttccaaaacTTTTTAATCGACCCTTGTAGAATGCGGGTTACAGGCGTGTAAATCCCGCTTCGTTTTGGAACTGATTATTGCTTCCGGCAGGCATGAGGCGGCGATTCTTGTATCGGATTGCAAATCCGTCTACGCCGGTTCGATTCCGACCTCG  <  NC_002947/4371778‑4371634                                                                                                                                                                                                                                                                                                                 TTTTTTCGACCCATAAAGAAAAACCCCGCAGACGTTAATCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACCGGCGTAGACGGATTTGCAATCCGATACAAGAATCGCCGCCTCATGCCTGCCGGAAGCAATAATCAG                                                                                                                                                            >  5:354849/1‑149           CCATAAAGAAAAACCCCGCAGACGTTAATCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACCGGCGTAGACGGATTTGCAATCCGATACAAGAATCGCCGCCTCATGCCTGCCGGAAGCAATAATCAGTTCCAAAAC                                                                                                                                                   >  4:134048/1‑148           CCATAAAGAAAAACCCCGCAGACGTTAATCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACCGGCGTAGACGGATTTGCAATCCGATACAAGAATCGCCGCCTCATGCCTGCCGGAAGCAATAATCAGTTCCAAAAC                                                                                                                                                   >  6:101204/1‑148              TAAAGAAAAACCCCGCAGACGTTAATCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACCGGCGTAGACGGATTTGCAATCCGATACAAGAATCGCCGCCTCATGCCTGCCGGAAGCAATAATCAGTTCCAAAACTTTT                                                                                                                                               >  5:159703/1‑149              TAAAGAAAAACCCCGCAGACGTTAATCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACCGGCGTAGACGGATTTGCAATCCGATACAAGAATCGCCGCCTCATGCCTGCCGGAAGCAATAATCAGTTCCAAAACTTTT                                                                                                                                               >  7:321743/1‑149                        CCCCGCAGACGTTAATCTGCGGGGCTTTCGAATGATGGAGGCCGAGGTCGGAATCGAACCGGCGTAGACGGATTTGCAATCCGATACAAGAATCGCCGCCTCATGCCTGCCGGAAGCAATAATCAGTTCCAAAA                                                                                                                                                    >  3:311619/1‑134                        CCCCGCAGACGTTAATCTGCGGGGCTTTCGAATGATGGAGGCCGAGGTCGGAATCGAACCGGCGTAGACGGATTTGCAATCCGATACAAGAATCGCCGCCTCATGCCTGCCGGAAGCAATAATCAGTTCCAAAA                                                                                                                                                    <  4:311619/134‑1                                                                         GGAATCGAACCGGCGTAGACGGATTTGCAATCCGATACAAGAATCGCCGCCTCATGCCTGCCGGAAGCAATAATCAGTTCCAAAACTTTTTAATCGACCCTTGTAGAATGCGGGTTACAGGCGTGTAAATCCCGCTTCGTTTTGGAACT                                                                                    <  8:321743/149‑1                                                                           AATCGAACCGGCGTAGACGGATTTGCAATCCGATACAAGAATCGCCGCCTCATGCCTGCCGGAAGCAATAATCAGTTCCAAAACTTTTTAATCGACCCTTGTAGAATGCGGGTTACAGGCGTGTAAATCCCGCTTCGTTTTGGAACTGA                                                                                  <  6:159703/149‑1                                                                            ATCGAACCGGCGTAGACGGATTTGCAATCCGATACAAGAATCGCCGCCTCATGCCTGCCGGAAGCAATAATCAGTTCCAAAACTTTTTAATCGACCCTTGTAGAATGCGGGTTACAGGCGTGTAAATCCCGCTTCGTTTTGGAACTGAT                                                                                 <  4:117976/149‑1                                                                                                                                                AATCAGTTCCAAAACTTTTTAATCGACCCTTGTAGAATGCGGGTTACAGGCGTGTAAATCCCGCTTCGTTTTGGAACTGATTATTGCTTCCGGCAGGCATGAGGCGGCGATTCTTGTATCGGATTGCAAATCCGTCTACGCCGGTTCGA             >  3:134048/1‑149                                                                                                                                                    AGTTCCAAAACTTTTTAATCGACCCTTGTAGAATGCGGGTTACAGGCGTGTAAATCCCGCTTCGTTTTGGAACTGATTATTGCTTCCGGCAGGCATGAGGCGGCGATTCTTGTATCGGATTGCAAATCCGTCTACGCCGGTTCGATTCC         <  6:239429/149‑1                                                                                                                                                     GTTCCAAAACTTTTTAATCGACCCTTGTAGAATGCGGGTTACAGGCGTGTAAATCCCGCTTCGTTTTGGAACTGATTATTGCTTCCGGCAGGCATGAGGCGGCGATTCTTGTATCGGATTGCAAATCCGTCTACGCCGGTTCGATTCCG        <  2:353405/149‑1                                                                                                                                                     GTTCCAAAACTTTTTAATCGACCCTTGTAGAAAGCGCGTTACAGGCGTGTAAATCCCGCTTCGTTTTGGAACTGAATATTGATTCCGGCAGGCATGAGGCGGCGATTCTTGTATCGGATTGCAAATACGTCTACGCCGGTTCGATTCC         >  3:63248/1‑148                                                                                                                                                           AAACTTTTTAATCGACCCTTGTAGAATGCGGGTTACAGGCGTGTAAATCCCGCTTCGTTTTGGAACTGATTATTGCTTCCGGCAGGCATGAGGCGGCGATTCTTGTATCGGATTGCAAATCCGTCTACGCCGGTTCGATTCCGACCTCG  <  6:52607/149‑1                                                                                                                                                                                                                                                                                                                 TTTTTTCGACCCATAAAGAAAAACCCCGCAGACGTTAATCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACCGGCGTAGACGGATTTGCAATCCGATACAAGAATCGCCGCCTCATGCCTGCCGGAAGCAATAATCAGTTCCAAAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4371569‑4371726 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatcagttccaaaacTTTTTAATCGACCCTTGTAGAATGCGGGTTACAGGCGTGTAAATCCCGCTTCGTTTTGGAACTGATTATTGCTTCCGGCAGGCATGAGGCGGCGATTCTTGTATCGGATTGCAAATCCGTCTACGCCGGTTCGATTCCGACCTCG  <  NC_002947/4371778‑4371634

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.