| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4593859 | 42 (0.740) | 4 (0.090) | 3/212 | NT | 10.9% | intergenic (+165/+134) | mccA/PP_4068 | methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha/Cro/CI family transcriptional regulator |
| ? | NC_002947 | = 4593904 | 31 (0.670) | intergenic (+210/+89) | mccA/PP_4068 | methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha/Cro/CI family transcriptional regulator | |||||
GAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4593689‑4593859‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtaaacccgctcctacaCGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAGCGACGGGTAGAGATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTC < NC_002947/4593904‑4593759 GAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATT > 3:165688/1‑149GAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGACGATCACCGTTGCCGCCGCTACAGTATa > 7:236424/1‑148GAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACAAGTCGATCACCGTTTCCTCAGCTACCGTAT > 8:318553/1‑148 ACGGTGGCGGAGGGCCGCTTTGCGGCCCTAACGCAACAGAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGG < 2:113114/149‑1 GGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGT < 2:256825/149‑1 GTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCGCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCGTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCTGGT > 8:302865/1‑148 GTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGT > 8:307888/1‑148 CCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCT < 1:117081/149‑1 CGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTA > 1:243851/1‑149 GCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTAC < 8:225116/149‑1 GCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTA > 7:225116/1‑148 CTTTGCGGCCCTAACGCAACACAAGGCCGCGCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTC > 1:29705/1‑144 CTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTC < 2:29705/144‑1 CAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCT > 4:276406/1‑130 GTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTAC < 1:359662/94‑1 GTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTAC > 2:359662/1‑94 TTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCG < 7:307888/149‑1 TTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCG < 7:302865/149‑1 GGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACGCGGCCTGCGCCTAATCACCAACATGCGTCCACCCCCGATCGGATGTAGGAGCGG < 4:12970/132‑1 GGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACGCGGCCTGCGCCTAATCACCAACATGCGTCCACCCCCGATCGGATGTAGGAGCGG > 3:12970/1‑132 TCGCGGCTAAACCCGCTCCTACACTCGGCATGCGCCTAATCACCAACATGTGTCCACCCCCTTTCGTATGTAGTAGCGTTTTTACCCGCGAATACTGTAGCGGCGGCAACGGTGAGCGACGGGTAGAGATTGGCCAGCAGGCCCGGC < 6:132733/147‑1 GCGGGTAAACCCGCTCCTACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAGCGACGGGTAGAGATTGGCCAGCAGGCCCGGCCCTT > 2:328710/1‑149 GGTAAACCCGCTCCTACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAGCGACGGGTAGAGATTGGCCAGCAGGCCCGGCCCTTTCG > 6:94954/1‑149 GTAAACCCGCTCCTACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAGCGACGGGTAGAGATTGGCCAGCAGGCCCGGCCCTTTCGC < 5:94954/149‑1 TCCTACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGAAGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAGCGACGGGTAGAGATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAAACCC > 1:177550/1‑149 CACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAGCGACGGGTAGAGATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTC < 2:177550/148‑1 GAATAACGGTGCCGGAGGGCCGCTTTGCGGCCCTAACGCAACACAAGGCCGCCCCTGCAACAGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4593689‑4593859‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtaaacccgctcctacaCGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAGCGACGGGTAGAGATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTC < NC_002947/4593904‑4593759 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |