| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4660236 = | 48 (0.850) | 4 (0.070) | 4/248 | NT | 7.8% | coding (594/1362 nt) | nuoF | NADH‑quinone oxidoreductase subunit F |
| ? | NC_002947 | 4660277 = | 49 (0.910) | coding (635/1362 nt) | nuoF | NADH‑quinone oxidoreductase subunit F | |||||
CGGGCCAGCGACTTGTACCAGTCGTTGCCGTTGGCGACGATGGCCGGGACGTTGCACAGGGTCTCGACGTTGTTCACGCACGTCGGCTTGCCCCACACGCCAACGGCGGCAGGGAAGGGCGGCTTGGAGCGCGGGTTGGCGCGGCGGCCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4660388‑4660236‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttccCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGCAACGACTGGTACAAGTCGCTGGCCCGCGAAGGCAGCGAGGACCACGGCACCAAGCTGATGGG > NC_002947/4660277‑4660424 CGGGCCAGCGACTTGTACCAGTCGTTGCCGTTGGCGACGATGGCCGGGACGTTGCACAGGGTCTCGACGTTGTTCACGCACGTCGGCTTGCCCCACACGCCAACGGCGGCAGGGAAGGGCGGCTTGGAGCGCGGGTTGGCGCGGCGGCC < 6:193464/149‑1 GGCCAGCGACTTGTACCAGTCGTTGCCGTTGGCGACGATGGCCGGGACGTTGCACAGGGTCTCGACGTTGTTCACGCACGTCGGCTTGCCCCACACGCCAACGGCGGCAGGGAAGGGCGGCTTGGAGCGCGGGTTGGCGCGGCGGCCTT > 6:191552/1‑149 GGAAGGGCGGCTTGGAGCGCGGGTTGGCGCGGCGGCCTTCCCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGC > 5:29097/1‑127 GGAAGGGCGGCTTGGAGCGCGGGTTGGCGCGGCGGCCTTCCCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGC < 6:29097/127‑1 GAAGGGCGGCTTGGAGCGCGGGTTGGCGCGGCGGCCTTCCCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCTCGGCCATCGTCGCCAACGGCAACGACTGGTACAA < 1:239588/140‑1 GAAGGGCGGCTTGGAGCGCGGGTTGGCGCGGCGGCCTTCCCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCTCGGCCATCGTCGCCAACGGCAACGACTGGTACAA > 2:239588/1‑140 CTTCCCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGCAACGACTGGTACAAGTCGCTGGCCCGCGAAGGCAGCGAGGACCACGGCACCAAGCTGA < 8:13238/149‑1 TTCCCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGCAACGACTGGTACAAGTCGCTGGCCCGCGAAGGCAGCGAGGACCACGGCACCAAGCTGAT > 7:324219/1‑149 CCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGTCAACGACTGGTACAAGTCGCTGGCCCGCGAAGGCAGCGAGGACCACGGCACCAAGCTGATGGG < 7:160817/149‑1 CCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGCAACGACTGGTACAAGTCGCTGGCCCGCGAAGGCAGCGAGGACCACGGCACCAAGCTGA > 7:283536/1‑145 CCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGCAACGACTGGTACAAGTCGCTGGCCCGCGAAGGCAGCGAGGACCACGGCACCAAGCTGA < 8:283536/145‑1 CGGGCCAGCGACTTGTACCAGTCGTTGCCGTTGGCGACGATGGCCGGGACGTTGCACAGGGTCTCGACGTTGTTCACGCACGTCGGCTTGCCCCACACGCCAACGGCGGCAGGGAAGGGCGGCTTGGAGCGCGGGTTGGCGCGGCGGCCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4660388‑4660236‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttccCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGCAACGACTGGTACAAGTCGCTGGCCCGCGAAGGCAGCGAGGACCACGGCACCAAGCTGATGGG > NC_002947/4660277‑4660424 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |