New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4992272	57 (1.010)	3 (0.060)	3/248	NT	5.5%	coding (229/1233 nt)	bkdAA	branched‑chain alpha‑keto acid dehydrogenase complex subunit alpha
	?	NC_002947	= 4992305	49 (0.910)					coding (262/1233 nt)	bkdAA	branched‑chain alpha‑keto acid dehydrogenase complex subunit alpha

CCTGCGCCTCAACGATGCAGGTCAAGCCCGTAAACCCGCGATCGATGTCGATGCTGCCGACACTGCCGACCTGTCCTACAGCCTGGTCCGCGTGCTCGACGAGCAAGGCGATGCGCAAGGCCCCTGGGCCGAAGACATCGACCCGCAGATCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4992121‑4992272 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agatccGCGTCTTGAGCATGGCGCGCATGCCTTGACGGAGGATCTGCGGGTCGATGTCTTCGGCCCAGGGGCCTTGCGCATCGCCTTGCTCGTCGAGCACGCGGACCAGGCTGTAGGACAGGTCGGCAGTGTCGGCAGCATCGACATCGATCGC  <  NC_002947/4992305‑4992158                                                                                                                                                                                                                                                                                                              CCTGCGCCTCAACGATGCAGGTCAAGCCCGTAAACCCGCGATCGATGTCGATGCTGCCGACACTGCCGACCTGTCCTACAGCCTGGTCCGCGTGCTCGACGAGCAAGGCGATGCGCAAGGCCCCTGGGCCGAAGACATCGACCCGCAG                                                                                                                                                          <  4:246/148‑1  CTGCGCCTCAACGATGCAGGTCAAGCCCGTAAACCCGCGATCGATGTCGATGCTGCCGACACTGCCGACCTGTCCTACAGCCTGGTCCGCGTGCTCGACGAGCAAGGCGATGCGCAAGGCCCCTGGGCCGAAGACATCGACCCGCAGAT                                                                                                                                                        <  2:42158/149‑1                                             ATGTCGATGCTGCCGACACTGCCGACCTGTCCTACAGCCTGGTCCGCGTGCTCGACGAGCAAGGCGATGCGCAAGGCCCCTGGGCCGAAGACATCGACCCGCAGATCCGCGTCTTGAGCATGGCGCGCATGCCTTGACGGAGGATCTGC                                                                                                             <  7:189742/149‑1                                                                TGCCGACCTGTCCTACAGCCTGGTCCGCGTGCTCGACGAGCAAGGCGATGCGCAAGGCCCCTGGGCCGAAGACATCGACCCGCAGATCCGCGTCTTGAGCATGGCGCGCATGCCTTGACGGAGGATCTGCGG                                                                                                           >  1:217867/1‑132                                                                TGCCGACCTGTCCTACAGCCTGGTCCGCGTGCTCGACGAGCAAGGCGATGCGCAAGGCCCCTGGGCCGAAGACATCGACCCGCAGATCCGCGTCTTGAGCATGGCGCGCATGCCTTGACGGAGGATCTGCGG                                                                                                           <  2:217867/132‑1                                                                                                                                                        CGCGTCTTGAGCATGGCGCGCATGCCTTGACGGAGGATCTGCGGGTCGATGTCTTCGGCCCAGGGGCCTTGCGCATCGCCTTGCTCGTCGAGCACGCGGACCAGGCTGTAGGACAGGTCGGCAGTGTCGGCAGCATCGACATCGATCGC  <  4:25903/149‑1                                                                                                                                                                                                                                                                                                              CCTGCGCCTCAACGATGCAGGTCAAGCCCGTAAACCCGCGATCGATGTCGATGCTGCCGACACTGCCGACCTGTCCTACAGCCTGGTCCGCGTGCTCGACGAGCAAGGCGATGCGCAAGGCCCCTGGGCCGAAGACATCGACCCGCAGATCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4992121‑4992272 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agatccGCGTCTTGAGCATGGCGCGCATGCCTTGACGGAGGATCTGCGGGTCGATGTCTTCGGCCCAGGGGCCTTGCGCATCGCCTTGCTCGTCGAGCACGCGGACCAGGCTGTAGGACAGGTCGGCAGTGTCGGCAGCATCGACATCGATCGC  <  NC_002947/4992305‑4992158

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.