New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5104522 =	63 (1.110)	3 (0.060)	3/246	NT	5.0%	coding (748/1203 nt)	yhhS	carbohydrate efflux transporter
	?	NC_002947	5104563 =	54 (1.010)					coding (789/1203 nt)	yhhS	carbohydrate efflux transporter

TTGGGTGCCAGCCACAGCATCAACAACCCGAGCGTTTCCACCGACAGGCAGGCGATCGCCACCCTGAAGCCACCGATGCGGTTGATCAGGTTGCCAAAGAGCAGCCGTGCGCTGATGAAACTGGCGCCGAACAGGCTCAGGGTCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5104670‑5104522 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagcgcACGGCTGCTCTTTGGCAACCTGATCAACCGCATCGGTGGCTTCAGGGTGGCGATCGCCTGCCTGTCGGTGGAA‑‑AC‑GCTCGGGTTGTTGATGCTGTGGCTGGCACCCAACGCCGAACTGGCCTTGGCGGGGGCTGCATTGAGCGGG  >  NC_002947/5104563‑5104707                                                                                                                                                                                                                                                                                                           TTGGGTGCCAGCCACAGCATCAACAACCCGAGCGTTTCCACCGACAGGCAGGCGATCGCCACCCTGAAGCCACCGATGCGGTTGATCAGGTTGCCAAAGAGCAGCCGTGCGCTGATGAAACTGGCGCCGAACAGGCTCAGGGTCAGCGC                                                                                                                                                      <  5:235760/149‑1                                                                                                         CCGTGCGCTGATGAAACTGGCGCCGAACAGGCTCAGGGTCAGCGCACGGCTGCTCTTTGGCAACCTGATCAACCGCATCGGTGGCTTCAGGGTGGCGATCGCCTGCCTGTCGGTGGAA‑‑AC‑GCTCGGGTTGTTGATGCTGTGGCTGGCAC                                           >  5:270379/1‑149                                                                                                           GTGCGCTGATGAAACTGGCGCCGAACAGGCTCAGGGTCAGCGCACGGCTGCTCTTTGGCAACCTGATCAACCGCATCGGTGGCTTCAGGGTGGCGATCGCCTGCCTGTCGGTGG                                                                               <  3:152415/114‑1                                                                                                           GTGCGCTGATGAAACTGGCGCCGAACAGGCTCAGGGTCAGCGCACGGCTGCTCTTTGGCAACCTGATCAACCGCATCGGTGGCTTCAGGGTGGCGATCGCCTGCCTGTCGGTGG                                                                               >  4:152415/1‑114                                                                                                                                               TCAGCGCACGGCTGCTCTTTGGCAACCTGATCAACCGCATCGGTGGCTTCAGGGTGGCGATCGCCTGCCTGTCGGTGGAA‑‑AC‑GCTCGGGTTGTTGATGCTGTGGCTGGCACCCAACGCCGAACTGGCCTTGGCGGGGGCTGCATTGAGC     >  3:62433/1‑149                                                                                                                                                  GCGCACGGCTGCTCTTTGGCAACCTGATCAACCGCATCGGTGGCTTCAGGGTGGCGATCGCCTGCCTGTCGGTGGAACTCCTGCTCGGGTTGTTGATGCTGTGGCTGGCACCCAACGCCGAACTGGCCTTGGCGGGGGCTGCATTGAGC     <  1:293772/149‑1                                                                                                                                                  GCGCACGGCTGCTCTTTGGCAACCTGATCAACCGCATCGGTGGCTTCAGGGTGGCGATCGCCTGCCTGTCGGTGGAA‑‑AC‑GCTCGGGTTGTTGATGCTGTGGCTGGCACCCAACGCCGAACTGGCCTTGGCGGGGGCTGCATTGAGCGGG  >  6:117851/1‑149                                                                                                                                                                                                                                                                                                           TTGGGTGCCAGCCACAGCATCAACAACCCGAGCGTTTCCACCGACAGGCAGGCGATCGCCACCCTGAAGCCACCGATGCGGTTGATCAGGTTGCCAAAGAGCAGCCGTGCGCTGATGAAACTGGCGCCGAACAGGCTCAGGGTCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5104670‑5104522 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagcgcACGGCTGCTCTTTGGCAACCTGATCAACCGCATCGGTGGCTTCAGGGTGGCGATCGCCTGCCTGTCGGTGGAA‑‑AC‑GCTCGGGTTGTTGATGCTGTGGCTGGCACCCAACGCCGAACTGGCCTTGGCGGGGGCTGCATTGAGCGGG  >  NC_002947/5104563‑5104707

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.