| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5283117 = | 61 (1.080) | 4 (0.080) | 4/244 | NT | 7.3% | coding (644/951 nt) | ypfJ | zinc metalloprotease |
| ? | NC_002947 | 5283187 = | 45 (0.850) | coding (714/951 nt) | ypfJ | zinc metalloprotease | |||||
AATGGCATTGGCCGCATTCAGCGCTTCCTCGACATCGCCTGGCTCCAGCCAGTTCAGGCGTTTCTGCGCCTGGTAGGCCCATACCCCGGCCAGGCAGTCAGCCTGCAACTCCTGGCGCACCAACAGGCCGTTGTCGCCCTCCATGCGCTGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5283271‑5283117‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggccggGGTATGGGCCTACCAGGCGCAGAAACGCCTGAACTGGCTGGAGCCAGGCGATGTCGAGGAAGCGCTGAATGCGGCCAATGCCATTGGCGACGACCGCCTGCAGCAGCAAGGCCGCGGCCGCGTAGTGCCGGACTCCTTCACCCAT > NC_002947/5283187‑5283331 AATGGCATTGGCCGCATTCAGCGCTTCCTCGACATCGCCTGGCTCCAGCCAGTTCAGGCGTTTCTGCGCCTGGTAGGCCCATACCCCGGCCAGGCAGTCAGCCTGCAACTCCTGGCGCACCAACAGGCCGTTGTCGCCCTCCATGCGCT < 5:227619/149‑1 ATGGCATTGGCCGCATTCAGCGCTTCCTCGACATCGCCTGGCTCCAGCCAGTTCAGGCGTTTCTGCGCCTGGTAGGCCCATACCCCGGCCAGGCAGTCAGCCTGCAACTCCTGGCGCACCAACAGGCCGTTGTCGCCCTCCATGCGCTG < 8:16743/149‑1 GCATTGGCCGCATTCAGCGCTTCCTCGACATCGCCTGGCTCCAGCCAGTTCAGGCGTTTCTGCGCCTGGTAGGCCCATACCCCGGCCAGGCAGTCAGCCTGCAACTCCTGGCGCACCAACAGGCCGTTGTCGCCCTCCATGCGCTGGCC < 8:69339/149‑1 CATTGGCCGCATTCAGCGCTTCCTCGACATCGCCTGGCTCCAGCCAGTTCAGGCGTTTCTGCGCCTGGTAGGCCCATACCCCGGCCAGGCAGTCAGCCTGCAACTCCTGGCGCACCAACAGGCCGTTGTCGCCCTCCATGCGCTGGCCG > 3:264398/1‑149 ATACCCCGGCCAGGCAGTCAGCCTGCAACTCCTGGCGCACCAACAGGCCGTTGTCGCCCTCCATGCGCTGGCCGGGGTATGGGCCTACCAGGCGCAGAAACGCCTGAACTGGCTGGAGCCAGGCGATGTCGAGGAAGCGCTGAATGCGG > 7:63297/1‑149 CCCGGCCAGGCAGTCAGCCTGCAACTCCTGGCGCACCAACAGGCCGTTGTCGCCCTCCATGCGCTGGCCGGGGTATGGGCCTACCAGGCGCAGAAACGCCTGAACTGGCTGGAGCCAGGCGATGTCGAGGAAGCGCTGAATGCGGCCAA > 4:229139/1‑149 GCGCACCAACAGGCCGTTGTCGCCCTCCATGCGCTGGCCGGGGTATGGGCCTACCAGGCGCAGAAACGCCTGAACTGGCTGGAGCCAGGCGATGTCGAGGAAGCGCTGAATGCGGCCAATGCCATTGGCGACGACCGCCTGCAGCAG < 3:229139/147‑1 CCGTTGTCGCCCTCCATGCGCTGGCCGGGGTATGGGCCTACCAGGCGCAGAAACGCCTGAACTGGCTGGAGCCAGGCGATGTCGAGGAAGCGCTGAATGCGGCCAATGCCATTGGCGACGACCGCCTGCAGCAGCAAGGCCGCGGCCGC < 8:63297/149‑1 GCCGGGGTATGGGCCTACCAGGCGCAGAAACGCCTGAACTGGCTGGAGCCAGGCGATGTCGAGGAAGCGCTGAATGCGGCCAATGCCATTGGCGACGACCGCCTGCAGCAGCAAGGCCGCGGCCGCGTAGTGCCGGACTCCTTCACC < 6:227619/147‑1 CCGGGGTATGGGCCTACCAGGCGCAGAAACGCCTGAACTGGCTGGAGCCAGGCGATGTCGAGGAAGCGCTGAATGCGGCCAATGCCATTGGCGACGACCGCCTGCAGCAGCAAGGCCGCGGCCGCGTAGTGCCGGACTCCTTCACCCAT < 3:149805/149‑1 AATGGCATTGGCCGCATTCAGCGCTTCCTCGACATCGCCTGGCTCCAGCCAGTTCAGGCGTTTCTGCGCCTGGTAGGCCCATACCCCGGCCAGGCAGTCAGCCTGCAACTCCTGGCGCACCAACAGGCCGTTGTCGCCCTCCATGCGCTGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5283271‑5283117‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggccggGGTATGGGCCTACCAGGCGCAGAAACGCCTGAACTGGCTGGAGCCAGGCGATGTCGAGGAAGCGCTGAATGCGGCCAATGCCATTGGCGACGACCGCCTGCAGCAGCAAGGCCGCGGCCGCGTAGTGCCGGACTCCTTCACCCAT > NC_002947/5283187‑5283331 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |