New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5423661	63 (1.110)	4 (0.070)	4/252	NT	6.7%	coding (43/687 nt)	PP_5712	hypothetical protein
	?	NC_002947	= 5423704	51 (0.930)					coding (86/687 nt)	PP_5712	hypothetical protein

CCTTCACCGGCCCCCGACAGGCCGCTTGGCAGGATGCCTGCCATCCACCGCCGCACCAGCCGCGGTACTGCCAACGGAGCAACGCATGCTATCGAGCAACACCCTGGGGCACCCCGCCATTCATGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5423534‑5423661 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccAGGGCGGCTCCGACGGCTTTGCGAGTCAGGCGTCGCTTGCGCCGGGCATGAATGGCGGGGTGCCCCAGGGTGTTGCTCGATAGCATGCGTTGCTCCGTTGGCAGTACCGCGGCTGGTGCGGCGGTGGATGGCAGGCATCCTGCCAAGC  <  NC_002947/5423704‑5423557                                                                                                                                                                                                                                                                                      CCTTCACCGGCCCCCGACAGGCCGCTTGGCAGGATGCCTGCCATCCACCGCCGCACCAGCCGCGGTACTGCCAACGGAGCAACGCATGCTATCGAGCAACACCCTGGGGCACCCCGCCATTCATGCCCAGGGCGGCTCCGACGGCTTTG                                                                                                                                 >  6:116974/1‑149                                GGATGCCTGCCATCCACCGCCGCACCAGCCGCGGTACTGCCAACGGAGCAACGCATGCTATCGAGCAACACCCTGGGGCACCCCGCCATTCATGCCCAGGGCGGCTCCGACGGCTTTGCGAGTCAGGCGTCGCTTGCGCCGGGCATGAA                                                                                                  <  5:116974/149‑1                                    GCCTGCCATCCACCGCCGCACCAGCCGCGGTACTGCCAACGGAGCAACGCATGCTATCGAGCAACACCCTGGGGCACCCCGCCATTCATGCCCAGGGCGGCTCCGACGGCTTTGCGAGTCAGGCGTCGCTTGCGCCGTGCATGAAT                                                                                                 <  8:3794/146‑1                                    GCCTGCCATCCACCGCCGCACCAGCCGCGGTACTGCCAACGGAGCAACGCATGCTATCGAGCAACACCCTGGGGCACCCCGCCATTCATGCCCAGGGCGGCTCCGACGGCTTTGCGAGTCAGGCGTCGCTTGCGCCGGGCATGAAT                                                                                                 >  7:3794/1‑146                                                                                                                             GCCCAGGGCGGCTCCGACGGCTTTGCGAGTCAGGCGTCGCTTGCGCCGGGCATGAATGGCGGGGTGCCCCAGGGTGTTGCTCGATAGCATGCGTTGCTCCGTTGGCAGTACCGCGGCTGGTGCGGCGGTGGATGGCAGGCATCCTGCC      >  1:243859/1‑148                                                                                                                             GCCCAGGGCGGCTCCGACGGCTTTGCGAGTCAGGCGTCGCTTGCGCCGGGCATGAATGGCGGGGTGCCCCAGGGTGTTGCTCGATAGCATGCGTTGCTCCGTTGGCAGTACCGCGGCTGGTGCGGCGGTGGATGGCAGGCATCCTGCC      >  3:15276/1‑148                                                                                                                             GCCCAGGGCGGCTCCGACGGCTTTGCGAGTCAGGCGTCGCTTGCGCCGGGCATGAATGGCGGGGTGCCCCAGGGTGTTGCTCGATAGCATGCGTTGCTCCGTTGGCAGTACCGCGGCTGGTGCGGCGGTGGATGGCAGGCATCCTGCC      <  4:15276/148‑1                                                                                                                              CCCAGGGCGGCTCCGACGGCTTTGCGAGTCAGGCGTCGCTTGCGCCGGGCATGAATGGCGGGGTGCCCCAGGGTGTTGCTCGATAGCATGCGTTGCTCCGTTGGCAGTACCGCGGCTGGTGCGGCGGTGGATGGCAGGCATCCTGCCAA    <  3:160412/149‑1                                                                                                                                CAGGGCGGCTCCGACGGCTTTGCGAGTCAGGCGTCGCTTGCGCCGGGCATGAATGGCGGGGTGCCCCAGGGTGTTGCTCGATAGCATGCGTTGCTCCGTTGGCAGTACCGCGGCTGGTGCGGCGGTGGATGGCAGGCATCCTGCCAAGC  <  1:319541/149‑1                                                                                                                                CAGGGCGGCTCCGACGGCTTTGCGAGTCAGGCGTCGCTTGCGCCGGGCATGAATGGCGGGGTGCCCCAGGGTGTTGCTCGATAGCATGCGTTGCTCCGTTGGCAGTACCGCGGCTGGTGCGGCGGTGGATGGCAGGCATCCTGCCAAGC  >  6:309957/1‑149                                                                                                                                                                                                                                                                                      CCTTCACCGGCCCCCGACAGGCCGCTTGGCAGGATGCCTGCCATCCACCGCCGCACCAGCCGCGGTACTGCCAACGGAGCAACGCATGCTATCGAGCAACACCCTGGGGCACCCCGCCATTCATGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5423534‑5423661 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccAGGGCGGCTCCGACGGCTTTGCGAGTCAGGCGTCGCTTGCGCCGGGCATGAATGGCGGGGTGCCCCAGGGTGTTGCTCGATAGCATGCGTTGCTCCGTTGGCAGTACCGCGGCTGGTGCGGCGGTGGATGGCAGGCATCCTGCCAAGC  <  NC_002947/5423704‑5423557

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.