New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5448975 =	62 (1.090)	3 (0.050)	3/254	NT	4.8%	intergenic (‑76/‑157)	PP_4786/ybeZ	hypothetical protein/nucleoside triphosphate hydrolase domain‑containing protein
	?	NC_002947	5449021 =	58 (1.050)					intergenic (‑122/‑111)	PP_4786/ybeZ	hypothetical protein/nucleoside triphosphate hydrolase domain‑containing protein
Rejected: Frequency below/above cutoff threshold.

CTCCCCGCGGGTCAACCCGCTCCGGCAAGGGCGGTGGGGATCCTGTGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5449023‑5448975 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggGAGGCCAGAACAGCCTGTACATACCGTTGAACGTTTCAGTGCTTTCGCCACTGCCATTCAAGGGTTATTCTTGAGTTCAACTCCATCGCCGTCGAGCGGCTAAAAACGACCTTGAACGCACCCATAGAACCCCATCGTTTCATCCTC  >  NC_002947/5449021‑5449167                                                                                                                                                                                                      CTCCCCGCGGGTCAACCCGCTCCGGCAAGGGCGGTGGGGATCCTGTGGGGAGGCCAGAACAGCCTGTACATACCGTTGAACGTTTCAGTGCTTTCGCCACTGCCATTCAAGGGTTATTCTTGAGTTCAACTCCATCGCCGTCGAGCGGC                                                 >  1:31133/1‑149  TCCCCGCGGGTCAACCCGCTCCGGCAAGGGCGGTGGGGATCCTGTGGGGAGGCCAGAACAGCCTGTACATACCGTTGAACGTTTCAGTGCTTTCGCCACTGCCATTCAAGGGTTATTCTTGAGTTCAACTCCATCGCCGTCGAGCGGC                                                 >  3:167840/1‑148            TCAACCCGCTCCGGCAAGGGCGGTGGGGATCCTGTGGGGAGGCCAGAACAGCCTGTACATACCGTTGAACGTTTCAGTGCTTTCGCCACTGCCATTCAAGGGTTATTCTTGAGTTCAACTCCATCGCCGTCGAGCGGCTAAAAACGACC                                      <  2:31133/149‑1                                                GGGAGGCCAGAACAGCCTGTACATACCGTTGAACGTTTCAGTGCTTTCGCCACTGCCATTCAAGGGTTATTCTTGAGTTCAACTCCATCGCCGTCGAGCGGCTAAAAACGACCTTGAACGCACCCATAGAACCCCATCGTTTCATCCTC  <  8:187592/149‑1                                                                                                                                                                                                      CTCCCCGCGGGTCAACCCGCTCCGGCAAGGGCGGTGGGGATCCTGTGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5449023‑5448975 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggGAGGCCAGAACAGCCTGTACATACCGTTGAACGTTTCAGTGCTTTCGCCACTGCCATTCAAGGGTTATTCTTGAGTTCAACTCCATCGCCGTCGAGCGGCTAAAAACGACCTTGAACGCACCCATAGAACCCCATCGTTTCATCCTC  >  NC_002947/5449021‑5449167

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.